Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0654
         (352 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY884062-1|AAX84203.1|  712|Tribolium castaneum laccase 2B protein.    23   0.91 
AY884061-1|AAX84202.1|  717|Tribolium castaneum laccase 2A protein.    23   1.2  
U09586-3|AAC47272.1|  470|Tribolium castaneum integrase protein.       21   4.8  
AF317551-1|AAG39634.1|  312|Tribolium castaneum distal-less prot...    21   4.8  
DQ211693-1|ABB16909.1|  314|Tribolium castaneum dorsocross protein.    20   6.4  
AJ223614-1|CAA11490.1|  301|Tribolium castaneum orthodenticle-2 ...    20   8.5  

>AY884062-1|AAX84203.1|  712|Tribolium castaneum laccase 2B protein.
          Length = 712

 Score = 23.0 bits (47), Expect = 0.91
 Identities = 13/37 (35%), Positives = 18/37 (48%)
 Frame = +2

Query: 110 SKPVHLTAFIGYKAGMTHVVREPDRPGSKINKKEIVE 220
           S P HL    GY   +  + R PD+   KIN K  ++
Sbjct: 594 SHPFHLH---GYAFNVVGIGRSPDQNVKKINLKHALD 627


>AY884061-1|AAX84202.1|  717|Tribolium castaneum laccase 2A protein.
          Length = 717

 Score = 22.6 bits (46), Expect = 1.2
 Identities = 13/37 (35%), Positives = 18/37 (48%)
 Frame = +2

Query: 110 SKPVHLTAFIGYKAGMTHVVREPDRPGSKINKKEIVE 220
           S P HL    GY   +  + R PD+   KIN K  ++
Sbjct: 594 SHPFHLH---GYAFNVIGIGRSPDQNVKKINLKHALD 627


>U09586-3|AAC47272.1|  470|Tribolium castaneum integrase protein.
          Length = 470

 Score = 20.6 bits (41), Expect = 4.8
 Identities = 9/15 (60%), Positives = 10/15 (66%)
 Frame = -1

Query: 202 VDF*TGTVRFSNHVG 158
           +DF T TVR  N VG
Sbjct: 5   MDFDTRTVRLRNRVG 19


>AF317551-1|AAG39634.1|  312|Tribolium castaneum distal-less
           protein.
          Length = 312

 Score = 20.6 bits (41), Expect = 4.8
 Identities = 6/16 (37%), Positives = 10/16 (62%)
 Frame = +2

Query: 107 PSKPVHLTAFIGYKAG 154
           P +P+H  ++ GY  G
Sbjct: 75  PFRPMHQNSYTGYHLG 90


>DQ211693-1|ABB16909.1|  314|Tribolium castaneum dorsocross protein.
          Length = 314

 Score = 20.2 bits (40), Expect = 6.4
 Identities = 8/18 (44%), Positives = 13/18 (72%)
 Frame = -3

Query: 299 ARSP*GVSMYPTTPTKPS 246
           A+SP  + M+P +P+K S
Sbjct: 95  AQSPHRIYMHPESPSKGS 112


>AJ223614-1|CAA11490.1|  301|Tribolium castaneum orthodenticle-2
           protein protein.
          Length = 301

 Score = 19.8 bits (39), Expect = 8.5
 Identities = 8/24 (33%), Positives = 11/24 (45%)
 Frame = +2

Query: 29  HGSMGFYPKKRSRRHRGKVKAFPK 100
           H SM  YP    R+ R +   F +
Sbjct: 55  HSSMAGYPAGNQRKQRRERTTFTR 78


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 87,838
Number of Sequences: 336
Number of extensions: 1783
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 122,585
effective HSP length: 50
effective length of database: 105,785
effective search space used:  6981810
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)