Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0654
         (352 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPB8E5.06c |rpl302|rpl3-2, rpl3-b|60S ribosomal protein L3|Sch...   149   9e-38
SPAC17A5.03 |rpl301|rpl3-1, rpl3|60S ribosomal protein L3 |Schiz...   149   1e-37
SPCC794.03 |||amino acid permease, unknown 13|Schizosaccharomyce...    26   2.0  
SPCC74.06 |mak3|phk2|histidine kinase Mak3 |Schizosaccharomyces ...    25   4.5  
SPBC30B4.04c |sol1||SWI/SNF complex subunit Sol1|Schizosaccharom...    24   6.0  
SPCC1393.10 |ctr4||copper transporter complex subunit Ctr4 |Schi...    24   7.9  

>SPAPB8E5.06c |rpl302|rpl3-2, rpl3-b|60S ribosomal protein
           L3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 388

 Score =  149 bits (362), Expect = 9e-38
 Identities = 66/85 (77%), Positives = 77/85 (90%)
 Frame = +2

Query: 2   SHRKFSAPRHGSMGFYPKKRSRRHRGKVKAFPKDDPSKPVHLTAFIGYKAGMTHVVREPD 181
           SH KF  PRHGS+GF P+KR+ R RGKVKAFPKDD SKPVHLTAF+GYKAGMTH+VR+ D
Sbjct: 2   SHCKFEQPRHGSLGFLPRKRASRQRGKVKAFPKDDASKPVHLTAFLGYKAGMTHIVRDLD 61

Query: 182 RPGSKINKKEIVEAVTIIETPPMVL 256
           RPGSK++K+EI+EAVTIIETPPMV+
Sbjct: 62  RPGSKMHKREILEAVTIIETPPMVV 86



 Score = 41.9 bits (94), Expect = 3e-05
 Identities = 17/21 (80%), Positives = 19/21 (90%)
 Frame = +1

Query: 256 VGVVGYIETPHGLRALLTVWA 318
           VGVVGY+ETP GLR+L TVWA
Sbjct: 87  VGVVGYVETPRGLRSLTTVWA 107


>SPAC17A5.03 |rpl301|rpl3-1, rpl3|60S ribosomal protein L3
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 388

 Score =  149 bits (361), Expect = 1e-37
 Identities = 65/85 (76%), Positives = 77/85 (90%)
 Frame = +2

Query: 2   SHRKFSAPRHGSMGFYPKKRSRRHRGKVKAFPKDDPSKPVHLTAFIGYKAGMTHVVREPD 181
           SH KF  PRHGS+GF P+KR+ R RGKVKAFPKDD SKPVHLTAF+GYKAGMTH+VR+ D
Sbjct: 2   SHCKFEQPRHGSLGFLPRKRASRQRGKVKAFPKDDASKPVHLTAFLGYKAGMTHIVRDLD 61

Query: 182 RPGSKINKKEIVEAVTIIETPPMVL 256
           RPGSK++K+EI+EAVT+IETPPMV+
Sbjct: 62  RPGSKMHKREILEAVTVIETPPMVV 86



 Score = 41.9 bits (94), Expect = 3e-05
 Identities = 17/21 (80%), Positives = 19/21 (90%)
 Frame = +1

Query: 256 VGVVGYIETPHGLRALLTVWA 318
           VGVVGY+ETP GLR+L TVWA
Sbjct: 87  VGVVGYVETPRGLRSLTTVWA 107


>SPCC794.03 |||amino acid permease, unknown 13|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 554

 Score = 25.8 bits (54), Expect = 2.0
 Identities = 18/55 (32%), Positives = 25/55 (45%)
 Frame = -1

Query: 175 FSNHVGHTGLITDKSSQMNRFARVVFRERLDLTTMTTGPLFGIESHRPMTGC*KF 11
           F N VG  G+I D S  +   +R+VF    D     +G L  ++SH   T    F
Sbjct: 344 FMNVVGILGMIFDTSLSIVASSRLVFAVARDGVLPFSGWLRKVDSHGQPTNAVTF 398


>SPCC74.06 |mak3|phk2|histidine kinase Mak3 |Schizosaccharomyces
            pombe|chr 3|||Manual
          Length = 2344

 Score = 24.6 bits (51), Expect = 4.5
 Identities = 11/29 (37%), Positives = 16/29 (55%)
 Frame = -2

Query: 333  SDICSCPDSQQSA*SMRGLNVSNNTDKTI 247
            S +C C  S  SA + +G+N+S N    I
Sbjct: 1864 SVVCDCMQSVYSACAEKGINLSYNVSPDI 1892


>SPBC30B4.04c |sol1||SWI/SNF complex subunit
           Sol1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 865

 Score = 24.2 bits (50), Expect = 6.0
 Identities = 11/31 (35%), Positives = 15/31 (48%)
 Frame = +2

Query: 71  HRGKVKAFPKDDPSKPVHLTAFIGYKAGMTH 163
           H   V++ PK+ P KPV  T    +  G  H
Sbjct: 294 HSANVQSRPKNYPQKPVQTTPEAVHANGSMH 324


>SPCC1393.10 |ctr4||copper transporter complex subunit Ctr4
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 289

 Score = 23.8 bits (49), Expect = 7.9
 Identities = 11/26 (42%), Positives = 19/26 (73%)
 Frame = -2

Query: 291 SMRGLNVSNNTDKTIGGVSMMVTAST 214
           SM G+N+SN+T  ++ G++M  T +T
Sbjct: 88  SMSGMNMSNST-TSMSGMNMTNTTTT 112


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,549,487
Number of Sequences: 5004
Number of extensions: 29966
Number of successful extensions: 89
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 85
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 89
length of database: 2,362,478
effective HSP length: 64
effective length of database: 2,042,222
effective search space used: 106195544
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)