Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--0654
(352 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
12_01_0435 + 3428552-3428636,3429242-3429352,3429434-3429738,342... 149 6e-37
11_01_0427 + 3274817-3274901,3275587-3275697,3275979-3276283,327... 147 2e-36
10_08_0261 + 16305388-16306104 28 1.8
08_01_0919 + 9062859-9062994,9063204-9063333,9063424-9064108 27 5.5
09_06_0358 - 22504716-22505588 26 9.6
02_05_0902 + 32620668-32621209,32621847-32622258,32622471-326226... 26 9.6
02_01_0413 - 3028946-3031111 26 9.6
01_07_0044 - 40701286-40701408,40701642-40701758,40702406-407024... 26 9.6
>12_01_0435 +
3428552-3428636,3429242-3429352,3429434-3429738,
3429821-3430230,3430323-3430556,3430934-3431378,
3432300-3432390,3433292-3433518,3433786-3433861,
3434009-3434134,3434221-3434384
Length = 757
Score = 149 bits (361), Expect = 6e-37
Identities = 64/85 (75%), Positives = 76/85 (89%)
Frame = +2
Query: 2 SHRKFSAPRHGSMGFYPKKRSRRHRGKVKAFPKDDPSKPVHLTAFIGYKAGMTHVVREPD 181
SHRKF PRHGS+GF P+KRS RHRGKVK+FPKDD SKP HLT+F+GYKAGMTH+VRE +
Sbjct: 2 SHRKFEHPRHGSLGFLPRKRSSRHRGKVKSFPKDDVSKPCHLTSFVGYKAGMTHIVREVE 61
Query: 182 RPGSKINKKEIVEAVTIIETPPMVL 256
+PGSK++KKE EAVTIIETPP+V+
Sbjct: 62 KPGSKLHKKETCEAVTIIETPPLVI 86
Score = 34.3 bits (75), Expect = 0.027
Identities = 13/21 (61%), Positives = 18/21 (85%)
Frame = +1
Query: 256 VGVVGYIETPHGLRALLTVWA 318
VG+V Y++TP GLR+L +VWA
Sbjct: 87 VGLVAYVKTPRGLRSLNSVWA 107
>11_01_0427 +
3274817-3274901,3275587-3275697,3275979-3276283,
3276406-3276815,3276942-3277200
Length = 389
Score = 147 bits (356), Expect = 2e-36
Identities = 63/85 (74%), Positives = 76/85 (89%)
Frame = +2
Query: 2 SHRKFSAPRHGSMGFYPKKRSRRHRGKVKAFPKDDPSKPVHLTAFIGYKAGMTHVVREPD 181
SHRKF PRHGS+GF P+KRS RHRGKVK+FPKDD +KP HLT+F+GYKAGMTH+VRE +
Sbjct: 2 SHRKFEHPRHGSLGFLPRKRSSRHRGKVKSFPKDDVNKPCHLTSFVGYKAGMTHIVREVE 61
Query: 182 RPGSKINKKEIVEAVTIIETPPMVL 256
+PGSK++KKE EAVTIIETPP+V+
Sbjct: 62 KPGSKLHKKETCEAVTIIETPPIVV 86
Score = 34.3 bits (75), Expect = 0.027
Identities = 13/21 (61%), Positives = 18/21 (85%)
Frame = +1
Query: 256 VGVVGYIETPHGLRALLTVWA 318
VG+V Y++TP GLR+L +VWA
Sbjct: 87 VGLVAYVKTPRGLRSLNSVWA 107
>10_08_0261 + 16305388-16306104
Length = 238
Score = 28.3 bits (60), Expect = 1.8
Identities = 14/36 (38%), Positives = 18/36 (50%), Gaps = 1/36 (2%)
Frame = -1
Query: 352 KRRRTVFR-HMLLPRQSTERVVHEGSQCIQQHRQNH 248
K R V R H PRQ +V +G + Q HR+ H
Sbjct: 198 KHHRPVLRRHRRQPRQEVHQVRPDGDRHAQDHRERH 233
>08_01_0919 + 9062859-9062994,9063204-9063333,9063424-9064108
Length = 316
Score = 26.6 bits (56), Expect = 5.5
Identities = 9/15 (60%), Positives = 11/15 (73%)
Frame = +1
Query: 202 QERDRGGCHHHRDSS 246
+ +DRGG HHHR S
Sbjct: 120 RRKDRGGGHHHRSQS 134
>09_06_0358 - 22504716-22505588
Length = 290
Score = 25.8 bits (54), Expect = 9.6
Identities = 10/16 (62%), Positives = 12/16 (75%)
Frame = +3
Query: 159 PTWLENLTVPVQKSTR 206
PTW + LTVP+ STR
Sbjct: 54 PTWDDKLTVPLPPSTR 69
>02_05_0902 +
32620668-32621209,32621847-32622258,32622471-32622675,
32622712-32622806,32622945-32623557,32623652-32623820,
32624392-32624749,32625226-32625336,32626207-32626561,
32627262-32627484,32627837-32628058,32628628-32628781
Length = 1152
Score = 25.8 bits (54), Expect = 9.6
Identities = 19/54 (35%), Positives = 23/54 (42%)
Frame = -1
Query: 214 DLFLVDF*TGTVRFSNHVGHTGLITDKSSQMNRFARVVFRERLDLTTMTTGPLF 53
+L LVD RF H GH L T F+ +F L LTT + LF
Sbjct: 436 ELGLVDIFVNLCRFEWHTGHRELATALFQAQIEFS--LFSPPLHLTTSSKQRLF 487
>02_01_0413 - 3028946-3031111
Length = 721
Score = 25.8 bits (54), Expect = 9.6
Identities = 16/48 (33%), Positives = 26/48 (54%)
Frame = -2
Query: 345 VGQSSDICSCPDSQQSA*SMRGLNVSNNTDKTIGGVSMMVTASTISFL 202
VGQ++ I + PD A S+ L+ NN + I ++M+ S + FL
Sbjct: 236 VGQNNIIGTLPDDLFRATSLEYLSFPNNHLQGIIDDALMIKLSNLGFL 283
>01_07_0044 -
40701286-40701408,40701642-40701758,40702406-40702498,
40702598-40702717,40702932-40703048,40703202-40703297,
40703395-40703544,40703916-40704070,40704156-40704196,
40704275-40704357,40704827-40705264
Length = 510
Score = 25.8 bits (54), Expect = 9.6
Identities = 22/84 (26%), Positives = 35/84 (41%), Gaps = 7/84 (8%)
Frame = +2
Query: 59 RSRRHRGKVKAFPKDDP-------SKPVHLTAFIGYKAGMTHVVREPDRPGSKINKKEIV 217
R R G + AFP++ P K +L G KA V+R + + K +
Sbjct: 114 RMREVAGLILAFPEERPVVVLSAMGKTTNLLLLAGEKAVGCGVIRVSEIEEWNLIKDLHI 173
Query: 218 EAVTIIETPPMVLSVLLDTLRPLM 289
+ V + P V+ +LD L L+
Sbjct: 174 KTVEELALPRSVIHTMLDELEQLL 197
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,478,497
Number of Sequences: 37544
Number of extensions: 213299
Number of successful extensions: 521
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 516
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 521
length of database: 14,793,348
effective HSP length: 73
effective length of database: 12,052,636
effective search space used: 518263348
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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