Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0654
         (352 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_51931| Best HMM Match : Ribosomal_L3 (HMM E-Value=0)               153   4e-38
SB_14332| Best HMM Match : Ribosomal_L3 (HMM E-Value=8.6e-34)         153   4e-38
SB_25655| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   1.1  
SB_9279| Best HMM Match : Piwi (HMM E-Value=0)                         29   1.4  
SB_42821| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   1.4  
SB_59107| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   2.4  
SB_52941| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   2.4  
SB_37973| Best HMM Match : ABC_tran (HMM E-Value=0)                    28   2.4  
SB_54689| Best HMM Match : DUF1525 (HMM E-Value=6.3)                   27   3.2  
SB_52907| Best HMM Match : RVT_1 (HMM E-Value=2.4e-17)                 27   3.2  
SB_54674| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   4.3  
SB_53128| Best HMM Match : CBFD_NFYB_HMF (HMM E-Value=3.1)             27   4.3  
SB_48462| Best HMM Match : zf-C2H2 (HMM E-Value=1.1e-18)               27   5.7  
SB_973| Best HMM Match : No HMM Matches (HMM E-Value=.)                26   7.5  
SB_9387| Best HMM Match : No HMM Matches (HMM E-Value=.)               26   7.5  
SB_28392| Best HMM Match : Exo_endo_phos (HMM E-Value=0.77)            26   9.9  
SB_57100| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   9.9  
SB_46645| Best HMM Match : Exo_endo_phos (HMM E-Value=0.044)           26   9.9  
SB_4374| Best HMM Match : GCS (HMM E-Value=6.2)                        26   9.9  

>SB_51931| Best HMM Match : Ribosomal_L3 (HMM E-Value=0)
          Length = 338

 Score =  153 bits (371), Expect = 4e-38
 Identities = 69/113 (61%), Positives = 88/113 (77%)
 Frame = +2

Query: 2   SHRKFSAPRHGSMGFYPKKRSRRHRGKVKAFPKDDPSKPVHLTAFIGYKAGMTHVVREPD 181
           SHRKF APRHGS+GF P+KR +RHRGKVK+FPKDD + P HLTAFIG+KAGMTH++RE +
Sbjct: 1   SHRKFEAPRHGSLGFLPRKRCKRHRGKVKSFPKDDNTLPPHLTAFIGFKAGMTHILREVE 60

Query: 182 RPGSKINKKEIVEAVTIIETPPMVLSVLLDTLRPLMDYALC*LSGQEHMSEDC 340
           +PGSK+NKKE VEAVTIIETPPM++  ++  +       +      EH+SE+C
Sbjct: 61  KPGSKLNKKEKVEAVTIIETPPMMVVGVVGYIETPRGMRVLKTIWAEHLSEEC 113


>SB_14332| Best HMM Match : Ribosomal_L3 (HMM E-Value=8.6e-34)
          Length = 347

 Score =  153 bits (371), Expect = 4e-38
 Identities = 69/113 (61%), Positives = 88/113 (77%)
 Frame = +2

Query: 2   SHRKFSAPRHGSMGFYPKKRSRRHRGKVKAFPKDDPSKPVHLTAFIGYKAGMTHVVREPD 181
           SHRKF APRHGS+GF P+KR +RHRGKVK+FPKDD + P HLTAFIG+KAGMTH++RE +
Sbjct: 49  SHRKFEAPRHGSLGFLPRKRCKRHRGKVKSFPKDDNTLPPHLTAFIGFKAGMTHILREVE 108

Query: 182 RPGSKINKKEIVEAVTIIETPPMVLSVLLDTLRPLMDYALC*LSGQEHMSEDC 340
           +PGSK+NKKE VEAVTIIETPPM++  ++  +       +      EH+SE+C
Sbjct: 109 KPGSKLNKKEKVEAVTIIETPPMMVVGVVGYIETPRGMRVLKTIWAEHLSEEC 161


>SB_25655| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 325

 Score = 29.1 bits (62), Expect = 1.1
 Identities = 23/93 (24%), Positives = 43/93 (46%), Gaps = 6/93 (6%)
 Frame = +2

Query: 8   RKFSAPRHGSMGFYPKKRSRRHRGK-VKAFPKDDPSKP-----VHLTAFIGYKAGMTHVV 169
           R+F  P+ G +G Y ++  R H GK +   PK +P +      + +  F G K  +T  +
Sbjct: 145 RRFWMPKFGHVGPYSEQVKRDHDGKIIDIIPKGNPMEDAYQGFISIIFFKGVKT-LTRSL 203

Query: 170 REPDRPGSKINKKEIVEAVTIIETPPMVLSVLL 268
            +  R  S+ + +  ++     + PP  L  +L
Sbjct: 204 NKRKRRPSRKDMRAGMKPYEAKKAPPFSLEDML 236


>SB_9279| Best HMM Match : Piwi (HMM E-Value=0)
          Length = 941

 Score = 28.7 bits (61), Expect = 1.4
 Identities = 11/23 (47%), Positives = 15/23 (65%)
 Frame = +1

Query: 247 DGFVGVVGYIETPHGLRALLTVW 315
           DGFVG  GY+   HGL  +L ++
Sbjct: 896 DGFVGSHGYLNVSHGLDVMLDLY 918


>SB_42821| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 239

 Score = 28.7 bits (61), Expect = 1.4
 Identities = 28/94 (29%), Positives = 40/94 (42%), Gaps = 5/94 (5%)
 Frame = +2

Query: 80  KVKAFPKDDPSKPV--HLTAFIGYKAGMTHVVREPDRPGSKINKKEIVEAVTIIETPPMV 253
           +++  P   P+ P   H T  IG+      V+R+       I   E  E+ +   TP   
Sbjct: 62  RLRQAPTSHPTDPTTSHPTDPIGFSEAQLSVIRKTVSDALAIVASEGTESFS---TPGSA 118

Query: 254 LSVLLDTLRPLMDYALC*---LSGQEHMSEDCPT 346
             + LD  RPL +   C     SG  H SEDCP+
Sbjct: 119 FPLGLD--RPLDEALECTGRGHSGPFHRSEDCPS 150


>SB_59107| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 64

 Score = 27.9 bits (59), Expect = 2.4
 Identities = 11/21 (52%), Positives = 13/21 (61%)
 Frame = +2

Query: 65  RRHRGKVKAFPKDDPSKPVHL 127
           R HR  + AFP D P+ PV L
Sbjct: 7   RAHRSSLHAFPPDGPAHPVSL 27


>SB_52941| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 772

 Score = 27.9 bits (59), Expect = 2.4
 Identities = 11/21 (52%), Positives = 13/21 (61%)
 Frame = +2

Query: 65  RRHRGKVKAFPKDDPSKPVHL 127
           R HR  + AFP D P+ PV L
Sbjct: 15  RAHRSSLHAFPPDGPAHPVSL 35


>SB_37973| Best HMM Match : ABC_tran (HMM E-Value=0)
          Length = 3369

 Score = 27.9 bits (59), Expect = 2.4
 Identities = 19/69 (27%), Positives = 32/69 (46%), Gaps = 1/69 (1%)
 Frame = -1

Query: 289  HEGSQCIQQHRQNHRRSLDDGDSLHDLFLVDF*T-GTVRFSNHVGHTGLITDKSSQMNRF 113
            H  SQ  ++HR  HR +   GD +H++ + D       R+S       LI+ +S+Q  R 
Sbjct: 1032 HNNSQKWREHRMRHRLTNLSGD-VHEMVMYDTTRFNATRYSGTCDIRHLISTRSTQRFRI 1090

Query: 112  ARVVFRERL 86
               +   R+
Sbjct: 1091 RHDMTHHRI 1099


>SB_54689| Best HMM Match : DUF1525 (HMM E-Value=6.3)
          Length = 298

 Score = 27.5 bits (58), Expect = 3.2
 Identities = 11/45 (24%), Positives = 24/45 (53%)
 Frame = +2

Query: 47  YPKKRSRRHRGKVKAFPKDDPSKPVHLTAFIGYKAGMTHVVREPD 181
           +P  ++ +   +V  +P  D    +H+ AF+G+K+  T  +  P+
Sbjct: 70  HPSSQNVKTSLRVPIYPPKDIQVDLHIKAFVGHKSRFTMYIPCPE 114


>SB_52907| Best HMM Match : RVT_1 (HMM E-Value=2.4e-17)
          Length = 344

 Score = 27.5 bits (58), Expect = 3.2
 Identities = 11/23 (47%), Positives = 13/23 (56%)
 Frame = +2

Query: 50  PKKRSRRHRGKVKAFPKDDPSKP 118
           PK   RR+R K+   PK DP  P
Sbjct: 279 PKHNIRRNRRKLNMLPKPDPETP 301


>SB_54674| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1149

 Score = 27.1 bits (57), Expect = 4.3
 Identities = 13/44 (29%), Positives = 23/44 (52%), Gaps = 1/44 (2%)
 Frame = +2

Query: 53  KKRSRRHRGKVKAFPKDDPSKPVHLTAFI-GYKAGMTHVVREPD 181
           +K  ++ + +  + PKD  S P HL A +  +   + H+VR  D
Sbjct: 384 RKSKKKEKRQSSSRPKDADSSPQHLAASVESFANYLKHLVRPED 427


>SB_53128| Best HMM Match : CBFD_NFYB_HMF (HMM E-Value=3.1)
          Length = 310

 Score = 27.1 bits (57), Expect = 4.3
 Identities = 8/24 (33%), Positives = 15/24 (62%)
 Frame = -1

Query: 319 LPRQSTERVVHEGSQCIQQHRQNH 248
           + + +T+R+  + +QCI QH   H
Sbjct: 114 ITQHATQRITQQATQCITQHATQH 137


>SB_48462| Best HMM Match : zf-C2H2 (HMM E-Value=1.1e-18)
          Length = 536

 Score = 26.6 bits (56), Expect = 5.7
 Identities = 13/35 (37%), Positives = 21/35 (60%)
 Frame = -2

Query: 348 DVGQSSDICSCPDSQQSA*SMRGLNVSNNTDKTIG 244
           +VG SS   +C DS  S+   +G   +N++ KT+G
Sbjct: 482 NVGTSSPWLACLDSGSSSDCNKGPEKNNDSSKTLG 516


>SB_973| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1200

 Score = 26.2 bits (55), Expect = 7.5
 Identities = 10/21 (47%), Positives = 12/21 (57%)
 Frame = -1

Query: 286 EGSQCIQQHRQNHRRSLDDGD 224
           EG  C   HR+  R SLDD +
Sbjct: 369 EGEPCFPVHRRGRRASLDDDE 389


>SB_9387| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 64

 Score = 26.2 bits (55), Expect = 7.5
 Identities = 10/21 (47%), Positives = 13/21 (61%)
 Frame = +2

Query: 65  RRHRGKVKAFPKDDPSKPVHL 127
           R H+  + AFP D P+ PV L
Sbjct: 7   RAHQSSLHAFPPDGPAHPVSL 27


>SB_28392| Best HMM Match : Exo_endo_phos (HMM E-Value=0.77)
          Length = 549

 Score = 25.8 bits (54), Expect = 9.9
 Identities = 9/27 (33%), Positives = 16/27 (59%)
 Frame = +2

Query: 167 VREPDRPGSKINKKEIVEAVTIIETPP 247
           +R+P R   K  KKE     +++++PP
Sbjct: 81  IRKPPRSKRKQKKKETANHTSVVDSPP 107


>SB_57100| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 64

 Score = 25.8 bits (54), Expect = 9.9
 Identities = 10/21 (47%), Positives = 12/21 (57%)
 Frame = +2

Query: 65  RRHRGKVKAFPKDDPSKPVHL 127
           R HR  + AFP D P+ P  L
Sbjct: 7   RAHRSSLHAFPPDGPAHPFSL 27


>SB_46645| Best HMM Match : Exo_endo_phos (HMM E-Value=0.044)
          Length = 464

 Score = 25.8 bits (54), Expect = 9.9
 Identities = 9/27 (33%), Positives = 16/27 (59%)
 Frame = +2

Query: 167 VREPDRPGSKINKKEIVEAVTIIETPP 247
           +R+P R   K  KKE     +++++PP
Sbjct: 150 IRKPPRSKRKPKKKETANHTSVVDSPP 176


>SB_4374| Best HMM Match : GCS (HMM E-Value=6.2)
          Length = 326

 Score = 25.8 bits (54), Expect = 9.9
 Identities = 9/27 (33%), Positives = 16/27 (59%)
 Frame = +2

Query: 167 VREPDRPGSKINKKEIVEAVTIIETPP 247
           +R+P R   K  KKE     +++++PP
Sbjct: 150 IRKPPRSKRKPKKKETANHTSVVDSPP 176


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,030,318
Number of Sequences: 59808
Number of extensions: 239974
Number of successful extensions: 651
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 562
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 649
length of database: 16,821,457
effective HSP length: 73
effective length of database: 12,455,473
effective search space used: 535585339
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)