Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--0654
(352 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z69337-1|CAA93269.1| 401|Caenorhabditis elegans ribosomal prote... 161 2e-40
Z69336-1|CAA93268.1| 401|Caenorhabditis elegans ribosomal prote... 161 2e-40
Z66495-14|CAH04729.1| 353|Caenorhabditis elegans Hypothetical p... 161 2e-40
Z66495-12|CAA91277.1| 401|Caenorhabditis elegans Hypothetical p... 161 2e-40
Z49936-7|CAH10799.1| 353|Caenorhabditis elegans Hypothetical pr... 161 2e-40
Z49936-6|CAA90183.1| 401|Caenorhabditis elegans Hypothetical pr... 161 2e-40
Z66495-15|CAH04728.1| 303|Caenorhabditis elegans Hypothetical p... 62 1e-10
Z49936-8|CAH10798.1| 303|Caenorhabditis elegans Hypothetical pr... 62 1e-10
Z92822-5|CAD45612.3| 743|Caenorhabditis elegans Hypothetical pr... 28 1.6
Z92822-4|CAD18893.2| 791|Caenorhabditis elegans Hypothetical pr... 28 1.6
Z92822-3|CAB07302.3| 774|Caenorhabditis elegans Hypothetical pr... 28 1.6
Z92822-2|CAB70188.2| 850|Caenorhabditis elegans Hypothetical pr... 28 1.6
U58084-1|AAC47121.1| 743|Caenorhabditis elegans CUL-2 protein. 27 2.9
AY130758-5|AAN61521.1| 2693|Caenorhabditis elegans 301KDa_2 prot... 27 5.0
AY130758-4|AAN61520.1| 2708|Caenorhabditis elegans 301KDa_1 prot... 27 5.0
AY130758-2|AAN61518.1| 18519|Caenorhabditis elegans 2MDa_2 prote... 27 5.0
AY130758-1|AAN61517.1| 18534|Caenorhabditis elegans 2MDa_1 prote... 27 5.0
AC024761-6|AAF59467.3| 599|Caenorhabditis elegans Hypothetical ... 27 5.0
AC024761-5|AAU05550.1| 601|Caenorhabditis elegans Hypothetical ... 27 5.0
Z81562-3|CAB04557.1| 352|Caenorhabditis elegans Hypothetical pr... 26 6.6
U53343-4|AAA96221.1| 56|Caenorhabditis elegans Hypothetical pr... 26 8.7
>Z69337-1|CAA93269.1| 401|Caenorhabditis elegans ribosomal protein
L3 protein.
Length = 401
Score = 161 bits (390), Expect = 2e-40
Identities = 68/86 (79%), Positives = 81/86 (94%)
Frame = +2
Query: 2 SHRKFSAPRHGSMGFYPKKRSRRHRGKVKAFPKDDPSKPVHLTAFIGYKAGMTHVVREPD 181
SHRKFSAPRHG MGF PKKRSR +RG++KAFPKDD SKP+HLTAF+GYKAGMTH+VR+ D
Sbjct: 2 SHRKFSAPRHGHMGFTPKKRSRTYRGRIKAFPKDDKSKPIHLTAFLGYKAGMTHIVRDVD 61
Query: 182 RPGSKINKKEIVEAVTIIETPPMVLS 259
+PGSK+NKKE+VEAVTI+ETPPMV++
Sbjct: 62 KPGSKVNKKEVVEAVTIVETPPMVIA 87
Score = 35.5 bits (78), Expect = 0.011
Identities = 13/20 (65%), Positives = 16/20 (80%)
Frame = +1
Query: 259 GVVGYIETPHGLRALLTVWA 318
GV GY++TP G RAL T+WA
Sbjct: 88 GVTGYVDTPQGPRALTTIWA 107
>Z69336-1|CAA93268.1| 401|Caenorhabditis elegans ribosomal protein
L3 protein.
Length = 401
Score = 161 bits (390), Expect = 2e-40
Identities = 68/86 (79%), Positives = 81/86 (94%)
Frame = +2
Query: 2 SHRKFSAPRHGSMGFYPKKRSRRHRGKVKAFPKDDPSKPVHLTAFIGYKAGMTHVVREPD 181
SHRKFSAPRHG MGF PKKRSR +RG++KAFPKDD SKP+HLTAF+GYKAGMTH+VR+ D
Sbjct: 2 SHRKFSAPRHGHMGFTPKKRSRTYRGRIKAFPKDDKSKPIHLTAFLGYKAGMTHIVRDVD 61
Query: 182 RPGSKINKKEIVEAVTIIETPPMVLS 259
+PGSK+NKKE+VEAVTI+ETPPMV++
Sbjct: 62 KPGSKVNKKEVVEAVTIVETPPMVIA 87
Score = 35.5 bits (78), Expect = 0.011
Identities = 13/20 (65%), Positives = 16/20 (80%)
Frame = +1
Query: 259 GVVGYIETPHGLRALLTVWA 318
GV GY++TP G RAL T+WA
Sbjct: 88 GVTGYVDTPQGPRALTTIWA 107
>Z66495-14|CAH04729.1| 353|Caenorhabditis elegans Hypothetical
protein F13B10.2c protein.
Length = 353
Score = 161 bits (390), Expect = 2e-40
Identities = 68/86 (79%), Positives = 81/86 (94%)
Frame = +2
Query: 2 SHRKFSAPRHGSMGFYPKKRSRRHRGKVKAFPKDDPSKPVHLTAFIGYKAGMTHVVREPD 181
SHRKFSAPRHG MGF PKKRSR +RG++KAFPKDD SKP+HLTAF+GYKAGMTH+VR+ D
Sbjct: 2 SHRKFSAPRHGHMGFTPKKRSRTYRGRIKAFPKDDKSKPIHLTAFLGYKAGMTHIVRDVD 61
Query: 182 RPGSKINKKEIVEAVTIIETPPMVLS 259
+PGSK+NKKE+VEAVTI+ETPPMV++
Sbjct: 62 KPGSKVNKKEVVEAVTIVETPPMVIA 87
Score = 35.5 bits (78), Expect = 0.011
Identities = 13/20 (65%), Positives = 16/20 (80%)
Frame = +1
Query: 259 GVVGYIETPHGLRALLTVWA 318
GV GY++TP G RAL T+WA
Sbjct: 88 GVTGYVDTPQGPRALTTIWA 107
>Z66495-12|CAA91277.1| 401|Caenorhabditis elegans Hypothetical
protein F13B10.2a protein.
Length = 401
Score = 161 bits (390), Expect = 2e-40
Identities = 68/86 (79%), Positives = 81/86 (94%)
Frame = +2
Query: 2 SHRKFSAPRHGSMGFYPKKRSRRHRGKVKAFPKDDPSKPVHLTAFIGYKAGMTHVVREPD 181
SHRKFSAPRHG MGF PKKRSR +RG++KAFPKDD SKP+HLTAF+GYKAGMTH+VR+ D
Sbjct: 2 SHRKFSAPRHGHMGFTPKKRSRTYRGRIKAFPKDDKSKPIHLTAFLGYKAGMTHIVRDVD 61
Query: 182 RPGSKINKKEIVEAVTIIETPPMVLS 259
+PGSK+NKKE+VEAVTI+ETPPMV++
Sbjct: 62 KPGSKVNKKEVVEAVTIVETPPMVIA 87
Score = 35.5 bits (78), Expect = 0.011
Identities = 13/20 (65%), Positives = 16/20 (80%)
Frame = +1
Query: 259 GVVGYIETPHGLRALLTVWA 318
GV GY++TP G RAL T+WA
Sbjct: 88 GVTGYVDTPQGPRALTTIWA 107
>Z49936-7|CAH10799.1| 353|Caenorhabditis elegans Hypothetical
protein F13B10.2c protein.
Length = 353
Score = 161 bits (390), Expect = 2e-40
Identities = 68/86 (79%), Positives = 81/86 (94%)
Frame = +2
Query: 2 SHRKFSAPRHGSMGFYPKKRSRRHRGKVKAFPKDDPSKPVHLTAFIGYKAGMTHVVREPD 181
SHRKFSAPRHG MGF PKKRSR +RG++KAFPKDD SKP+HLTAF+GYKAGMTH+VR+ D
Sbjct: 2 SHRKFSAPRHGHMGFTPKKRSRTYRGRIKAFPKDDKSKPIHLTAFLGYKAGMTHIVRDVD 61
Query: 182 RPGSKINKKEIVEAVTIIETPPMVLS 259
+PGSK+NKKE+VEAVTI+ETPPMV++
Sbjct: 62 KPGSKVNKKEVVEAVTIVETPPMVIA 87
Score = 35.5 bits (78), Expect = 0.011
Identities = 13/20 (65%), Positives = 16/20 (80%)
Frame = +1
Query: 259 GVVGYIETPHGLRALLTVWA 318
GV GY++TP G RAL T+WA
Sbjct: 88 GVTGYVDTPQGPRALTTIWA 107
>Z49936-6|CAA90183.1| 401|Caenorhabditis elegans Hypothetical
protein F13B10.2a protein.
Length = 401
Score = 161 bits (390), Expect = 2e-40
Identities = 68/86 (79%), Positives = 81/86 (94%)
Frame = +2
Query: 2 SHRKFSAPRHGSMGFYPKKRSRRHRGKVKAFPKDDPSKPVHLTAFIGYKAGMTHVVREPD 181
SHRKFSAPRHG MGF PKKRSR +RG++KAFPKDD SKP+HLTAF+GYKAGMTH+VR+ D
Sbjct: 2 SHRKFSAPRHGHMGFTPKKRSRTYRGRIKAFPKDDKSKPIHLTAFLGYKAGMTHIVRDVD 61
Query: 182 RPGSKINKKEIVEAVTIIETPPMVLS 259
+PGSK+NKKE+VEAVTI+ETPPMV++
Sbjct: 62 KPGSKVNKKEVVEAVTIVETPPMVIA 87
Score = 35.5 bits (78), Expect = 0.011
Identities = 13/20 (65%), Positives = 16/20 (80%)
Frame = +1
Query: 259 GVVGYIETPHGLRALLTVWA 318
GV GY++TP G RAL T+WA
Sbjct: 88 GVTGYVDTPQGPRALTTIWA 107
>Z66495-15|CAH04728.1| 303|Caenorhabditis elegans Hypothetical
protein F13B10.2d protein.
Length = 303
Score = 61.7 bits (143), Expect = 1e-10
Identities = 26/33 (78%), Positives = 29/33 (87%)
Frame = +2
Query: 2 SHRKFSAPRHGSMGFYPKKRSRRHRGKVKAFPK 100
SHRKFSAPRHG MGF PKKRSR +RG++KAF K
Sbjct: 2 SHRKFSAPRHGHMGFTPKKRSRTYRGRIKAFTK 34
>Z49936-8|CAH10798.1| 303|Caenorhabditis elegans Hypothetical
protein F13B10.2d protein.
Length = 303
Score = 61.7 bits (143), Expect = 1e-10
Identities = 26/33 (78%), Positives = 29/33 (87%)
Frame = +2
Query: 2 SHRKFSAPRHGSMGFYPKKRSRRHRGKVKAFPK 100
SHRKFSAPRHG MGF PKKRSR +RG++KAF K
Sbjct: 2 SHRKFSAPRHGHMGFTPKKRSRTYRGRIKAFTK 34
>Z92822-5|CAD45612.3| 743|Caenorhabditis elegans Hypothetical
protein ZK520.4d protein.
Length = 743
Score = 28.3 bits (60), Expect = 1.6
Identities = 14/42 (33%), Positives = 24/42 (57%)
Frame = -1
Query: 319 LPRQSTERVVHEGSQCIQQHRQNHRRSLDDGDSLHDLFLVDF 194
+P +ER+ +E CIQ+H + R+ + D D DL L ++
Sbjct: 50 IPTPLSERLYNEVKACIQEHVRQKRQDIVDVDP--DLLLQEY 89
>Z92822-4|CAD18893.2| 791|Caenorhabditis elegans Hypothetical
protein ZK520.4c protein.
Length = 791
Score = 28.3 bits (60), Expect = 1.6
Identities = 14/42 (33%), Positives = 24/42 (57%)
Frame = -1
Query: 319 LPRQSTERVVHEGSQCIQQHRQNHRRSLDDGDSLHDLFLVDF 194
+P +ER+ +E CIQ+H + R+ + D D DL L ++
Sbjct: 67 IPTPLSERLYNEVKACIQEHVRQKRQDIVDVDP--DLLLQEY 106
>Z92822-3|CAB07302.3| 774|Caenorhabditis elegans Hypothetical
protein ZK520.4b protein.
Length = 774
Score = 28.3 bits (60), Expect = 1.6
Identities = 14/42 (33%), Positives = 24/42 (57%)
Frame = -1
Query: 319 LPRQSTERVVHEGSQCIQQHRQNHRRSLDDGDSLHDLFLVDF 194
+P +ER+ +E CIQ+H + R+ + D D DL L ++
Sbjct: 50 IPTPLSERLYNEVKACIQEHVRQKRQDIVDVDP--DLLLQEY 89
>Z92822-2|CAB70188.2| 850|Caenorhabditis elegans Hypothetical
protein ZK520.4a protein.
Length = 850
Score = 28.3 bits (60), Expect = 1.6
Identities = 14/42 (33%), Positives = 24/42 (57%)
Frame = -1
Query: 319 LPRQSTERVVHEGSQCIQQHRQNHRRSLDDGDSLHDLFLVDF 194
+P +ER+ +E CIQ+H + R+ + D D DL L ++
Sbjct: 126 IPTPLSERLYNEVKACIQEHVRQKRQDIVDVDP--DLLLQEY 165
>U58084-1|AAC47121.1| 743|Caenorhabditis elegans CUL-2 protein.
Length = 743
Score = 27.5 bits (58), Expect = 2.9
Identities = 14/42 (33%), Positives = 23/42 (54%)
Frame = -1
Query: 319 LPRQSTERVVHEGSQCIQQHRQNHRRSLDDGDSLHDLFLVDF 194
+P ER+ +E CIQ+H + R+ + D D DL L ++
Sbjct: 50 IPTPLIERLYNEVKACIQEHVRQKRQDIVDVDP--DLLLQEY 89
>AY130758-5|AAN61521.1| 2693|Caenorhabditis elegans 301KDa_2 protein
protein.
Length = 2693
Score = 26.6 bits (56), Expect = 5.0
Identities = 9/23 (39%), Positives = 14/23 (60%)
Frame = -1
Query: 265 QHRQNHRRSLDDGDSLHDLFLVD 197
+H Q+HR DDG + L ++D
Sbjct: 697 EHSQHHRLQFDDGSGNYSLTIID 719
>AY130758-4|AAN61520.1| 2708|Caenorhabditis elegans 301KDa_1 protein
protein.
Length = 2708
Score = 26.6 bits (56), Expect = 5.0
Identities = 9/23 (39%), Positives = 14/23 (60%)
Frame = -1
Query: 265 QHRQNHRRSLDDGDSLHDLFLVD 197
+H Q+HR DDG + L ++D
Sbjct: 712 EHSQHHRLQFDDGSGNYSLTIID 734
>AY130758-2|AAN61518.1| 18519|Caenorhabditis elegans 2MDa_2 protein
protein.
Length = 18519
Score = 26.6 bits (56), Expect = 5.0
Identities = 9/23 (39%), Positives = 14/23 (60%)
Frame = -1
Query: 265 QHRQNHRRSLDDGDSLHDLFLVD 197
+H Q+HR DDG + L ++D
Sbjct: 16523 EHSQHHRLQFDDGSGNYSLTIID 16545
>AY130758-1|AAN61517.1| 18534|Caenorhabditis elegans 2MDa_1 protein
protein.
Length = 18534
Score = 26.6 bits (56), Expect = 5.0
Identities = 9/23 (39%), Positives = 14/23 (60%)
Frame = -1
Query: 265 QHRQNHRRSLDDGDSLHDLFLVD 197
+H Q+HR DDG + L ++D
Sbjct: 16538 EHSQHHRLQFDDGSGNYSLTIID 16560
>AC024761-6|AAF59467.3| 599|Caenorhabditis elegans Hypothetical
protein Y38C1AA.5a protein.
Length = 599
Score = 26.6 bits (56), Expect = 5.0
Identities = 19/57 (33%), Positives = 26/57 (45%), Gaps = 2/57 (3%)
Frame = +2
Query: 80 KVKAFPKDDPSKPVHLTAFIGYKAGMTHVVREP--DRPGSKINKKEIVEAVTIIETP 244
KV A +DPS + + T+ + P D P S N KEI E TI+ +P
Sbjct: 310 KVDASKWNDPSAYATAPSTVDSTTPKTYREQPPTADAPFSSDNSKEIHETSTIVASP 366
>AC024761-5|AAU05550.1| 601|Caenorhabditis elegans Hypothetical
protein Y38C1AA.5b protein.
Length = 601
Score = 26.6 bits (56), Expect = 5.0
Identities = 19/57 (33%), Positives = 26/57 (45%), Gaps = 2/57 (3%)
Frame = +2
Query: 80 KVKAFPKDDPSKPVHLTAFIGYKAGMTHVVREP--DRPGSKINKKEIVEAVTIIETP 244
KV A +DPS + + T+ + P D P S N KEI E TI+ +P
Sbjct: 312 KVDASKWNDPSAYATAPSTVDSTTPKTYREQPPTADAPFSSDNSKEIHETSTIVASP 368
>Z81562-3|CAB04557.1| 352|Caenorhabditis elegans Hypothetical
protein K03D7.6 protein.
Length = 352
Score = 26.2 bits (55), Expect = 6.6
Identities = 11/21 (52%), Positives = 16/21 (76%)
Frame = +1
Query: 253 FVGVVGYIETPHGLRALLTVW 315
FVGV+ + E P+G++ LL VW
Sbjct: 97 FVGVLSWFEVPNGVQ-LLIVW 116
>U53343-4|AAA96221.1| 56|Caenorhabditis elegans Hypothetical
protein F22F4.4 protein.
Length = 56
Score = 25.8 bits (54), Expect = 8.7
Identities = 12/46 (26%), Positives = 23/46 (50%)
Frame = -1
Query: 352 KRRRTVFRHMLLPRQSTERVVHEGSQCIQQHRQNHRRSLDDGDSLH 215
+R+ +VFR L+ + ++ + S+C+ QH Q + LH
Sbjct: 2 RRKMSVFR--LIIKSPLSKIFNNLSKCLSQHLQKKFNDIKSSQYLH 45
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,724,922
Number of Sequences: 27780
Number of extensions: 176993
Number of successful extensions: 405
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 392
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 405
length of database: 12,740,198
effective HSP length: 72
effective length of database: 10,740,038
effective search space used: 472561672
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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