Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0654
         (352 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    24   0.60 
DQ201783-1|ABB05503.1|  381|Apis mellifera capa receptor-like GP...    23   1.0  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    21   3.2  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    21   3.2  
AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor ...    21   4.2  
AF004842-1|AAD01205.1|  598|Apis mellifera major royal jelly pro...    21   5.6  
AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       20   7.4  
AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate r...    20   9.8  

>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
           protein.
          Length = 1370

 Score = 23.8 bits (49), Expect = 0.60
 Identities = 8/21 (38%), Positives = 12/21 (57%)
 Frame = +3

Query: 264 CWIH*DPSWTTRSVDCLGRSI 326
           C  + D +W T +VDC G  +
Sbjct: 765 CKCYNDRTWNTNAVDCSGLGV 785


>DQ201783-1|ABB05503.1|  381|Apis mellifera capa receptor-like GPCR
           protein.
          Length = 381

 Score = 23.0 bits (47), Expect = 1.0
 Identities = 10/26 (38%), Positives = 16/26 (61%)
 Frame = -2

Query: 231 MVTASTISFLLIFEPGRSGSLTTWVI 154
           MV   TI +++IF  G  G++TT  +
Sbjct: 39  MVIPLTIIYMIIFVTGIFGNITTCTV 64


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
            AbsCAM-Ig7B protein.
          Length = 1923

 Score = 21.4 bits (43), Expect = 3.2
 Identities = 7/20 (35%), Positives = 12/20 (60%)
 Frame = +2

Query: 242  PPMVLSVLLDTLRPLMDYAL 301
            PP+  + L+D L+P   Y +
Sbjct: 961  PPLPYAALIDELKPATRYTI 980


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
            AbsCAM-Ig7A protein.
          Length = 1919

 Score = 21.4 bits (43), Expect = 3.2
 Identities = 7/20 (35%), Positives = 12/20 (60%)
 Frame = +2

Query: 242  PPMVLSVLLDTLRPLMDYAL 301
            PP+  + L+D L+P   Y +
Sbjct: 957  PPLPYAALIDELKPATRYTI 976


>AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor A
           isoform protein.
          Length = 567

 Score = 21.0 bits (42), Expect = 4.2
 Identities = 9/25 (36%), Positives = 14/25 (56%)
 Frame = +2

Query: 140 GYKAGMTHVVREPDRPGSKINKKEI 214
           GY + M+    +P  P SKI + E+
Sbjct: 131 GYASPMSTSSYDPYSPNSKIGRDEL 155


>AF004842-1|AAD01205.1|  598|Apis mellifera major royal jelly
           protein MRJP5 protein.
          Length = 598

 Score = 20.6 bits (41), Expect = 5.6
 Identities = 10/25 (40%), Positives = 14/25 (56%)
 Frame = -1

Query: 142 TDKSSQMNRFARVVFRERLDLTTMT 68
           TDK S M+R  R+   +R+D    T
Sbjct: 435 TDKMSSMDRMDRMDRVDRMDTMDRT 459



 Score = 20.6 bits (41), Expect = 5.6
 Identities = 8/22 (36%), Positives = 15/22 (68%)
 Frame = -1

Query: 142 TDKSSQMNRFARVVFRERLDLT 77
           TDK S+++R  ++   +R+D T
Sbjct: 507 TDKMSRIDRMDKIDRMDRMDRT 528


>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 20.2 bits (40), Expect = 7.4
 Identities = 11/42 (26%), Positives = 19/42 (45%)
 Frame = -1

Query: 331 RHMLLPRQSTERVVHEGSQCIQQHRQNHRRSLDDGDSLHDLF 206
           +H+L P Q    +        QQ +Q+H+ S  +  S  + F
Sbjct: 80  QHILSPTQLQSFMQQHSLYLQQQQQQHHQDSSSEHASNQERF 121


>AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate
           receptor 1 protein.
          Length = 953

 Score = 19.8 bits (39), Expect = 9.8
 Identities = 8/22 (36%), Positives = 13/22 (59%)
 Frame = +2

Query: 218 EAVTIIETPPMVLSVLLDTLRP 283
           + +TI+E  P   S L+  L+P
Sbjct: 542 QGITILEKKPSRSSTLVSFLQP 563


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 105,153
Number of Sequences: 438
Number of extensions: 2114
Number of successful extensions: 9
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 51
effective length of database: 124,005
effective search space used:  8060325
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)