Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--0654
(352 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g61580.1 68414.m06939 60S ribosomal protein L3 (RPL3B) identi... 149 4e-37
At1g43170.2 68414.m04975 60S ribosomal protein L3 (RPL3A) identi... 141 1e-34
At1g43170.1 68414.m04974 60S ribosomal protein L3 (RPL3A) identi... 141 1e-34
At1g29195.1 68414.m03572 expressed protein 30 0.38
At4g25440.1 68417.m03663 WD-40 repeat family protein / zfwd1 pro... 27 4.6
At1g15490.1 68414.m01864 hydrolase, alpha/beta fold family prote... 27 4.6
At5g02880.1 68418.m00231 HECT-domain-containing protein / ubiqui... 26 6.1
At2g14440.1 68415.m01616 leucine-rich repeat protein kinase, put... 26 6.1
At1g55050.1 68414.m06288 expressed protein ; expression supporte... 26 6.1
At1g10870.1 68414.m01249 ARF GTPase-activating domain-containing... 26 6.1
At3g14750.1 68416.m01865 expressed protein weak similarity to Se... 26 8.1
At2g47420.1 68415.m05919 dimethyladenosine transferase, putative... 26 8.1
>At1g61580.1 68414.m06939 60S ribosomal protein L3 (RPL3B) identical
to ribosomal protein GI:806279 from [Arabidopsis
thaliana]
Length = 390
Score = 149 bits (362), Expect = 4e-37
Identities = 70/113 (61%), Positives = 91/113 (80%), Gaps = 1/113 (0%)
Frame = +2
Query: 2 SHRKFSAPRHGSMGFYPKKRSRRHRGKVKAFPKDDPSKPVHLTAFIGYKAGMTHVVREPD 181
SHRKF PRHGS+GF P+KR+ RHRGKVKAFPKDDP+KP LT+F+GYKAGMTH+VR+ +
Sbjct: 2 SHRKFEHPRHGSLGFLPRKRASRHRGKVKAFPKDDPTKPCRLTSFLGYKAGMTHIVRDVE 61
Query: 182 RPGSKINKKEIVEAVTIIETPPMVLSVLLDTLR-PLMDYALC*LSGQEHMSED 337
+PGSK++KKE EAVTIIETPPMV+ ++ ++ P +LC + Q H+SE+
Sbjct: 62 KPGSKLHKKETCEAVTIIETPPMVVVGVVGYVKTPRGLRSLCTVWAQ-HLSEE 113
>At1g43170.2 68414.m04975 60S ribosomal protein L3 (RPL3A) identical
to ribosomal protein GI:166858 from [Arabidopsis
thaliana]
Length = 389
Score = 141 bits (342), Expect = 1e-34
Identities = 62/85 (72%), Positives = 73/85 (85%)
Frame = +2
Query: 2 SHRKFSAPRHGSMGFYPKKRSRRHRGKVKAFPKDDPSKPVHLTAFIGYKAGMTHVVREPD 181
SHRKF PRHGS+GF P+KR+ RHRGKVKAFPKDD +KP TAF+GYKAGMTH+VRE +
Sbjct: 2 SHRKFEHPRHGSLGFLPRKRANRHRGKVKAFPKDDQTKPCKFTAFMGYKAGMTHIVREVE 61
Query: 182 RPGSKINKKEIVEAVTIIETPPMVL 256
+PGSK++KKE EAVTIIETP MV+
Sbjct: 62 KPGSKLHKKETCEAVTIIETPAMVV 86
Score = 37.1 bits (82), Expect = 0.003
Identities = 15/21 (71%), Positives = 18/21 (85%)
Frame = +1
Query: 256 VGVVGYIETPHGLRALLTVWA 318
VGVV Y++TP GLR+L TVWA
Sbjct: 87 VGVVAYVKTPRGLRSLNTVWA 107
>At1g43170.1 68414.m04974 60S ribosomal protein L3 (RPL3A) identical
to ribosomal protein GI:166858 from [Arabidopsis
thaliana]
Length = 389
Score = 141 bits (342), Expect = 1e-34
Identities = 62/85 (72%), Positives = 73/85 (85%)
Frame = +2
Query: 2 SHRKFSAPRHGSMGFYPKKRSRRHRGKVKAFPKDDPSKPVHLTAFIGYKAGMTHVVREPD 181
SHRKF PRHGS+GF P+KR+ RHRGKVKAFPKDD +KP TAF+GYKAGMTH+VRE +
Sbjct: 2 SHRKFEHPRHGSLGFLPRKRANRHRGKVKAFPKDDQTKPCKFTAFMGYKAGMTHIVREVE 61
Query: 182 RPGSKINKKEIVEAVTIIETPPMVL 256
+PGSK++KKE EAVTIIETP MV+
Sbjct: 62 KPGSKLHKKETCEAVTIIETPAMVV 86
Score = 37.1 bits (82), Expect = 0.003
Identities = 15/21 (71%), Positives = 18/21 (85%)
Frame = +1
Query: 256 VGVVGYIETPHGLRALLTVWA 318
VGVV Y++TP GLR+L TVWA
Sbjct: 87 VGVVAYVKTPRGLRSLNTVWA 107
>At1g29195.1 68414.m03572 expressed protein
Length = 193
Score = 30.3 bits (65), Expect = 0.38
Identities = 13/41 (31%), Positives = 24/41 (58%)
Frame = +2
Query: 125 LTAFIGYKAGMTHVVREPDRPGSKINKKEIVEAVTIIETPP 247
+TA KA HV+++P P S ++++++ A I+ PP
Sbjct: 37 ITASEIMKAHPKHVLKKPSSPTSDHDERDVISATKIVIVPP 77
>At4g25440.1 68417.m03663 WD-40 repeat family protein / zfwd1
protein (ZFWD1) identical to zfwd1 protein (GI:12057164)
[Arabidopsis thaliana]
Length = 430
Score = 26.6 bits (56), Expect = 4.6
Identities = 11/43 (25%), Positives = 21/43 (48%)
Frame = -2
Query: 288 MRGLNVSNNTDKTIGGVSMMVTASTISFLLIFEPGRSGSLTTW 160
++ N+ NN D ++ G V + + L+F + GS+ W
Sbjct: 206 VKAWNIQNNADLSLNGPVGQVYSLVVGTDLLFAGTQDGSILVW 248
>At1g15490.1 68414.m01864 hydrolase, alpha/beta fold family protein
Contains PF 00561 alpha/beta hydrolase fold
Length = 648
Score = 26.6 bits (56), Expect = 4.6
Identities = 17/45 (37%), Positives = 21/45 (46%), Gaps = 2/45 (4%)
Frame = -1
Query: 265 QHRQNHR--RSLDDGDSLHDLFLVDF*TGTVRFSNHVGHTGLITD 137
QH +HR SL + SLHD L T + F TGL+ D
Sbjct: 304 QHHHHHRSYNSLFNNSSLHDPLLDGSPTSPLLFKEIKEGTGLVDD 348
>At5g02880.1 68418.m00231 HECT-domain-containing protein /
ubiquitin-transferase family protein /
armadillo/beta-catenin-like repeat-containing protein
similar to SP|Q14669 Thyroid receptor interacting protein
12 (TRIP12) {Homo sapiens}; contains Pfam profiles
PF00632: HECT-domain (ubiquitin-transferase), PF00514:
Armadillo/beta-catenin-like repeat
Length = 1502
Score = 26.2 bits (55), Expect = 6.1
Identities = 15/48 (31%), Positives = 23/48 (47%)
Frame = -1
Query: 349 RRRTVFRHMLLPRQSTERVVHEGSQCIQQHRQNHRRSLDDGDSLHDLF 206
R TV++ +LL + +E S+ H + RS GDS +LF
Sbjct: 897 RSLTVYQAILLHKLKSESEATNDSKLSGPHNITYERSAQLGDSRENLF 944
>At2g14440.1 68415.m01616 leucine-rich repeat protein kinase,
putative similar to light repressible receptor protein
kinase [Arabidopsis thaliana] gi|1321686|emb|CAA66376;
contains leucine rich repeat (LRR) domains,
Pfam:PF00560; contains protein kinase domain,
Pfam:PF00069
Length = 886
Score = 26.2 bits (55), Expect = 6.1
Identities = 11/31 (35%), Positives = 17/31 (54%)
Frame = -1
Query: 313 RQSTERVVHEGSQCIQQHRQNHRRSLDDGDS 221
R + RV HE ++C++ + RRS D S
Sbjct: 839 RPNMTRVAHELNECLEIYNLTKRRSQDQNSS 869
>At1g55050.1 68414.m06288 expressed protein ; expression supported
by MPSS
Length = 914
Score = 26.2 bits (55), Expect = 6.1
Identities = 13/32 (40%), Positives = 15/32 (46%)
Frame = -1
Query: 307 STERVVHEGSQCIQQHRQNHRRSLDDGDSLHD 212
S VHE S QQ N RS + +LHD
Sbjct: 651 SISETVHEPSSSAQQQEPNGLRSSKEQGALHD 682
>At1g10870.1 68414.m01249 ARF GTPase-activating domain-containing
protein
Length = 775
Score = 26.2 bits (55), Expect = 6.1
Identities = 12/40 (30%), Positives = 16/40 (40%)
Frame = +1
Query: 190 FKNQQERDRGGCHHHRDSSDGFVGVVGYIETPHGLRALLT 309
++ + G HH+ SSD GV G H LT
Sbjct: 322 YRTNGNKSMGSHHHYSGSSDHNTGVFGRFRARHNRSGSLT 361
>At3g14750.1 68416.m01865 expressed protein weak similarity to
Septation ring formation regulator (Swiss-Prot:O34894)
[Bacillus subtilis]
Length = 331
Score = 25.8 bits (54), Expect = 8.1
Identities = 12/23 (52%), Positives = 14/23 (60%)
Frame = +1
Query: 259 GVVGYIETPHGLRALLTVWAGAY 327
GVVGY P+G +A WAG Y
Sbjct: 294 GVVGYYPPPYGPQA---AWAGGY 313
>At2g47420.1 68415.m05919 dimethyladenosine transferase, putative
similar to SP|P41819 Dimethyladenosine transferase (EC
2.1.1.-) (S-adenosylmethionine-6-N', N'-adenosyl(rRNA)
dimethyltransferase) {Saccharomyces cerevisiae};
contains Pfam profile PF00398: ribosomal RNA adenine
dimethylase family protein
Length = 353
Score = 25.8 bits (54), Expect = 8.1
Identities = 12/17 (70%), Positives = 14/17 (82%), Gaps = 1/17 (5%)
Frame = +2
Query: 164 VVR-EPDRPGSKINKKE 211
VVR EP RPG ++NKKE
Sbjct: 204 VVRIEPRRPGPQVNKKE 220
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,311,398
Number of Sequences: 28952
Number of extensions: 166928
Number of successful extensions: 443
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 434
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 442
length of database: 12,070,560
effective HSP length: 72
effective length of database: 9,986,016
effective search space used: 439384704
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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