Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0651
         (648 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_01_0038 + 260080-260380,260852-261022,261764-261810,262266-26...    30   1.4  
06_01_0352 + 2541022-2542069,2542280-2542335                           29   3.2  
11_06_0723 - 26688378-26688385,26689351-26689569,26690100-266901...    28   5.6  
04_04_1242 - 32016553-32016857,32017628-32017784,32017871-320180...    27   9.7  

>05_01_0038 +
           260080-260380,260852-261022,261764-261810,262266-262412,
           262495-262569,262826-262935,263032-263159,263368-263429,
           263599-263748,263827-263861,264083-264151,264538-264629,
           264718-264794,265434-265532
          Length = 520

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 17/52 (32%), Positives = 31/52 (59%)
 Frame = -1

Query: 222 PIKPVRSVILDNNHSHNYIVAVHSFNNFKELTLNLSTSYILSV*VKNIVI*D 67
           P + +R ++L +N     +++V S N F  LTL LST  ++S  +K++ + D
Sbjct: 317 PFEKLRVLLLGSNQIDE-VLSVDSLNLFPSLTLWLSTPILISTFLKDVRLSD 367


>06_01_0352 + 2541022-2542069,2542280-2542335
          Length = 367

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 15/41 (36%), Positives = 19/41 (46%)
 Frame = -2

Query: 380 MLINPFATSGNYRNTACTRWVSCFLRNTVARPPVAKGLNRL 258
           M I PFA   +   TACT W   F  +   +P   + LN L
Sbjct: 262 MQIRPFAKCDDLLETACTCWFDVFEADFTVQPCQWRRLNTL 302


>11_06_0723 -
           26688378-26688385,26689351-26689569,26690100-26690106,
           26690194-26690256,26690329-26690400,26690507-26691681,
           26692024-26692626,26692643-26692781
          Length = 761

 Score = 28.3 bits (60), Expect = 5.6
 Identities = 13/31 (41%), Positives = 19/31 (61%)
 Frame = +2

Query: 446 KWLLKPIDIYDANAPPTLRHQSKVSV*LQRL 538
           K +L PI +     PP+LR QSK+   ++RL
Sbjct: 567 KMVLSPISVRRRGRPPSLRKQSKLDQVVRRL 597


>04_04_1242 -
           32016553-32016857,32017628-32017784,32017871-32018089,
           32018184-32018470,32018629-32019934,32020021-32020178,
           32020250-32020335,32023106-32023173,32023297-32023340,
           32023418-32023490,32023605-32023684,32023774-32023867,
           32023981-32024151,32024463-32024557,32025049-32025128,
           32025137-32025333,32025896-32026183
          Length = 1235

 Score = 27.5 bits (58), Expect = 9.7
 Identities = 11/24 (45%), Positives = 15/24 (62%)
 Frame = -2

Query: 353 GNYRNTACTRWVSCFLRNTVARPP 282
           G  RN +C +    FLR+T +RPP
Sbjct: 381 GISRNLSCIKIAGLFLRDTFSRPP 404


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,396,993
Number of Sequences: 37544
Number of extensions: 290395
Number of successful extensions: 559
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 551
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 559
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1608522592
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)