Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0651
         (648 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_27527| Best HMM Match : MFAP1_C (HMM E-Value=0.57)                  31   0.81 
SB_58594| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.3  
SB_6953| Best HMM Match : Phage_integrase (HMM E-Value=0.33)           29   4.3  
SB_26567| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.7  
SB_24872| Best HMM Match : efhand (HMM E-Value=0.48)                   28   5.7  
SB_41383| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.9  

>SB_27527| Best HMM Match : MFAP1_C (HMM E-Value=0.57)
          Length = 818

 Score = 31.1 bits (67), Expect = 0.81
 Identities = 14/32 (43%), Positives = 20/32 (62%)
 Frame = -1

Query: 228 E*PIKPVRSVILDNNHSHNYIVAVHSFNNFKE 133
           E P+K +R+ +L N+ + NY V  HS NN  E
Sbjct: 455 ELPLKKLRTKLLKNDANDNYSVVGHSNNNLSE 486


>SB_58594| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1001

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 13/34 (38%), Positives = 19/34 (55%), Gaps = 2/34 (5%)
 Frame = +2

Query: 401 YYCLDRGR--AHSSPGVKWLLKPIDIYDANAPPT 496
           Y C DR R  A +S  +   +KP + ++A  PPT
Sbjct: 500 YICSDRARMAASASAAISQRIKPPETHEAETPPT 533


>SB_6953| Best HMM Match : Phage_integrase (HMM E-Value=0.33)
          Length = 721

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 13/34 (38%), Positives = 19/34 (55%), Gaps = 2/34 (5%)
 Frame = +2

Query: 401 YYCLDRGR--AHSSPGVKWLLKPIDIYDANAPPT 496
           Y C DR R  A +S  +   +KP + ++A  PPT
Sbjct: 500 YICSDRARMAASASAAISQRIKPPETHEAETPPT 533


>SB_26567| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 259

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 14/44 (31%), Positives = 21/44 (47%)
 Frame = -2

Query: 350 NYRNTACTRWVSCFLRNTVARPPVAKGLNRLSIY*LPLHNKSDQ 219
           N RNT+C R   C   N   R  +A G+ ++S     +  K+ Q
Sbjct: 14  NQRNTSCDRHQDCSTHNASQRKSLATGIMQVSTMPFAICTKTAQ 57


>SB_24872| Best HMM Match : efhand (HMM E-Value=0.48)
          Length = 412

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 8/20 (40%), Positives = 16/20 (80%)
 Frame = +2

Query: 233 YEEVINKCSTCLTLSLREAL 292
           YEE++ +C+ CL+ ++R+ L
Sbjct: 315 YEEIVKRCAQCLSYNVRQCL 334



 Score = 28.3 bits (60), Expect = 5.7
 Identities = 8/20 (40%), Positives = 16/20 (80%)
 Frame = +2

Query: 233 YEEVINKCSTCLTLSLREAL 292
           YEE++ +C+ CL+ ++R+ L
Sbjct: 359 YEEIVERCAQCLSYNVRQCL 378


>SB_41383| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1995

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 11/18 (61%), Positives = 12/18 (66%)
 Frame = -1

Query: 324  MGELFPTKHCSKASRSER 271
            +GEL P KHC   SRS R
Sbjct: 1926 VGELIPLKHCLDVSRSTR 1943


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,872,029
Number of Sequences: 59808
Number of extensions: 335639
Number of successful extensions: 669
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 632
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 669
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1645141000
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)