Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0651
         (648 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ325076-1|ABD14090.1|  191|Apis mellifera complementary sex det...    25   0.48 
DQ325130-1|ABD14144.1|  174|Apis mellifera complementary sex det...    22   4.4  
DQ325129-1|ABD14143.1|  174|Apis mellifera complementary sex det...    22   4.4  
DQ325128-1|ABD14142.1|  174|Apis mellifera complementary sex det...    22   4.4  
DQ325127-1|ABD14141.1|  174|Apis mellifera complementary sex det...    22   4.4  
DQ325126-1|ABD14140.1|  174|Apis mellifera complementary sex det...    22   4.4  
DQ325125-1|ABD14139.1|  174|Apis mellifera complementary sex det...    22   4.4  
DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholi...    22   4.4  

>DQ325076-1|ABD14090.1|  191|Apis mellifera complementary sex
           determiner protein.
          Length = 191

 Score = 25.4 bits (53), Expect = 0.48
 Identities = 9/26 (34%), Positives = 19/26 (73%)
 Frame = -1

Query: 192 DNNHSHNYIVAVHSFNNFKELTLNLS 115
           +NN+ +NY    +++NN+K+L  N++
Sbjct: 97  NNNNYNNYNYNNNNYNNYKKLYYNIN 122


>DQ325130-1|ABD14144.1|  174|Apis mellifera complementary sex
           determiner protein.
          Length = 174

 Score = 22.2 bits (45), Expect = 4.4
 Identities = 8/22 (36%), Positives = 16/22 (72%)
 Frame = -1

Query: 180 SHNYIVAVHSFNNFKELTLNLS 115
           S+NY  + ++ NN+K+L  N++
Sbjct: 86  SNNYNYSNYNNNNYKQLCYNIN 107


>DQ325129-1|ABD14143.1|  174|Apis mellifera complementary sex
           determiner protein.
          Length = 174

 Score = 22.2 bits (45), Expect = 4.4
 Identities = 8/22 (36%), Positives = 16/22 (72%)
 Frame = -1

Query: 180 SHNYIVAVHSFNNFKELTLNLS 115
           S+NY  + ++ NN+K+L  N++
Sbjct: 86  SNNYNYSNYNNNNYKQLCYNIN 107


>DQ325128-1|ABD14142.1|  174|Apis mellifera complementary sex
           determiner protein.
          Length = 174

 Score = 22.2 bits (45), Expect = 4.4
 Identities = 8/22 (36%), Positives = 16/22 (72%)
 Frame = -1

Query: 180 SHNYIVAVHSFNNFKELTLNLS 115
           S+NY  + ++ NN+K+L  N++
Sbjct: 86  SNNYNYSNYNNNNYKQLCYNIN 107


>DQ325127-1|ABD14141.1|  174|Apis mellifera complementary sex
           determiner protein.
          Length = 174

 Score = 22.2 bits (45), Expect = 4.4
 Identities = 8/22 (36%), Positives = 16/22 (72%)
 Frame = -1

Query: 180 SHNYIVAVHSFNNFKELTLNLS 115
           S+NY  + ++ NN+K+L  N++
Sbjct: 86  SNNYNYSNYNNNNYKQLCYNIN 107


>DQ325126-1|ABD14140.1|  174|Apis mellifera complementary sex
           determiner protein.
          Length = 174

 Score = 22.2 bits (45), Expect = 4.4
 Identities = 8/22 (36%), Positives = 16/22 (72%)
 Frame = -1

Query: 180 SHNYIVAVHSFNNFKELTLNLS 115
           S+NY  + ++ NN+K+L  N++
Sbjct: 86  SNNYNYSNYNNNNYKQLCYNIN 107


>DQ325125-1|ABD14139.1|  174|Apis mellifera complementary sex
           determiner protein.
          Length = 174

 Score = 22.2 bits (45), Expect = 4.4
 Identities = 8/22 (36%), Positives = 16/22 (72%)
 Frame = -1

Query: 180 SHNYIVAVHSFNNFKELTLNLS 115
           S+NY  + ++ NN+K+L  N++
Sbjct: 86  SNNYNYSNYNNNNYKQLCYNIN 107


>DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholine
           receptor alpha9subunit protein.
          Length = 431

 Score = 22.2 bits (45), Expect = 4.4
 Identities = 10/24 (41%), Positives = 13/24 (54%)
 Frame = +2

Query: 473 YDANAPPTLRHQSKVSV*LQRLPR 544
           YD N  P   HQ   +V +Q LP+
Sbjct: 55  YDPNVRPISSHQIANNVTMQLLPK 78


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 166,849
Number of Sequences: 438
Number of extensions: 3537
Number of successful extensions: 9
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19560480
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)