Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--0650
(620 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC32H8.12c |act1|cps8|actin |Schizosaccharomyces pombe|chr 2||... 154 9e-39
SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomy... 73 3e-14
SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces pomb... 69 4e-13
SPAC23D3.09 |arp42|arp4|SWI/SNF and RSC complex subunit Arp42|Sc... 69 7e-13
SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex s... 53 3e-08
SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces pombe... 43 3e-05
SPCC550.12 |arp6||actin-like protein Arp6|Schizosaccharomyces po... 43 4e-05
SPAC630.03 |arp3|act2|actin-like protein Arp3|Schizosaccharomyce... 42 1e-04
SPAC664.02c |||actin-like protein Arp8 |Schizosaccharomyces pomb... 38 9e-04
SPAPB1A10.08 |||sequence orphan|Schizosaccharomyces pombe|chr 1|... 29 0.72
SPAC1071.06 |arp9||SWI/SNF and RSC complex subunit Arp9|Schizosa... 28 1.3
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1... 27 1.7
SPCC576.05 |||nucear export factor|Schizosaccharomyces pombe|chr... 27 2.9
SPBP4H10.15 |||aconitate hydratase|Schizosaccharomyces pombe|chr... 26 3.8
SPAC16.04 |dus3||tRNA dihydrouridine synthase Dus3 |Schizosaccha... 26 5.1
SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces pom... 25 8.8
SPBC646.02 |cwf11||complexed with Cdc5 protein Cwf11 |Schizosacc... 25 8.8
SPBCPT2R1.08c |tlh2||RecQ type DNA helicase Tlh1|Schizosaccharom... 25 8.8
>SPBC32H8.12c |act1|cps8|actin |Schizosaccharomyces pombe|chr
2|||Manual
Length = 375
Score = 154 bits (374), Expect = 9e-39
Identities = 75/100 (75%), Positives = 82/100 (82%)
Frame = -1
Query: 581 ETTYNSHHEVRRGHP*GLVRQHRIAGGTTMYPGIADRMQKEITALAPSTMKIKIIAPPER 402
E TYNS + L ++GGTTMYPGIADRMQKEI ALAPS+MK+KI+APPER
Sbjct: 276 EATYNSIMKCDVDIRKDLYGNVVMSGGTTMYPGIADRMQKEIQALAPSSMKVKIVAPPER 335
Query: 401 KYSVWIGGSILASLSTFQQMWISKQEYDESGPSIVHRKCF 282
KYSVWIGGSILASLSTFQQMWISKQEYDESGP IV+RKCF
Sbjct: 336 KYSVWIGGSILASLSTFQQMWISKQEYDESGPGIVYRKCF 375
>SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 433
Score = 72.9 bits (171), Expect = 3e-14
Identities = 35/82 (42%), Positives = 56/82 (68%), Gaps = 6/82 (7%)
Frame = -1
Query: 512 IAGGTTMYPGIADRMQKEITALAPSTMKIKIIAPP---ERKYSVWIGGSILASLSTFQQM 342
+ GGT++ G + R+Q E++ L P + ++KI A ER Y+ W+GGSIL+SL TF Q+
Sbjct: 352 VCGGTSLMQGFSLRLQNELSKLYPGS-RLKIHASGHVVERSYASWLGGSILSSLGTFHQL 410
Query: 341 WISKQEYDESGP---SIVHRKC 285
WIS+QEY+E G +++ ++C
Sbjct: 411 WISRQEYEEHGSDRLALIEKRC 432
>SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 379
Score = 69.3 bits (162), Expect = 4e-13
Identities = 30/77 (38%), Positives = 54/77 (70%)
Frame = -1
Query: 512 IAGGTTMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWIS 333
++GG+T+ G +R E+ A++ ++KI A PER ++ W+GGSILASLSTF+++ I+
Sbjct: 304 LSGGSTLLRGFGERFISELRAISGKKNQVKIYASPERMHNAWLGGSILASLSTFRRLLIT 363
Query: 332 KQEYDESGPSIVHRKCF 282
+EY ++ +++ R+ F
Sbjct: 364 SEEY-KNDQNVIFRRRF 379
>SPAC23D3.09 |arp42|arp4|SWI/SNF and RSC complex subunit
Arp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 430
Score = 68.5 bits (160), Expect = 7e-13
Identities = 32/70 (45%), Positives = 45/70 (64%), Gaps = 2/70 (2%)
Frame = -1
Query: 512 IAGGTTMYPGIADRMQKEITALAP-STMKIKIIAPPER-KYSVWIGGSILASLSTFQQMW 339
+ GGT++ PG+++R+Q E+ LA S + + +VW GGSILASL FQ +W
Sbjct: 349 VTGGTSLIPGLSERLQAEVQRLATGSRINVHTAETASATSNAVWFGGSILASLDNFQHLW 408
Query: 338 ISKQEYDESG 309
+SKQEYDE G
Sbjct: 409 VSKQEYDEVG 418
>SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex
subunit Arp2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 390
Score = 53.2 bits (122), Expect = 3e-08
Identities = 31/86 (36%), Positives = 52/86 (60%), Gaps = 12/86 (13%)
Frame = -1
Query: 530 LVRQHRIAGGTTMYPGIADRMQKEITAL--------APSTM---KIKIIAPPERKYSVWI 384
L R ++GG++MY G+ R++KEI L P+ + K+KI P R+++V+I
Sbjct: 293 LYRAIVLSGGSSMYAGLPSRLEKEIKQLWFERVLHGDPARLPNFKVKIEDAPRRRHAVFI 352
Query: 383 GGSILAS-LSTFQQMWISKQEYDESG 309
GG++LA ++ MW+SK E++E G
Sbjct: 353 GGAVLADIMAQNDHMWVSKAEWEEYG 378
>SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 721
Score = 43.2 bits (97), Expect = 3e-05
Identities = 21/78 (26%), Positives = 36/78 (46%)
Frame = -1
Query: 530 LVRQHRIAGGTTMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTF 351
LV I GG PG+ R+++E+T++ P I + W G S + F
Sbjct: 634 LVSNVLITGGLGSLPGMETRIKRELTSIMPVGSSINVFRASNPLLDAWKGASEWSVTEKF 693
Query: 350 QQMWISKQEYDESGPSIV 297
+ ++++EY E GP +
Sbjct: 694 KAAKVTREEYLEKGPEYI 711
>SPCC550.12 |arp6||actin-like protein Arp6|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 401
Score = 42.7 bits (96), Expect = 4e-05
Identities = 22/73 (30%), Positives = 37/73 (50%)
Frame = -1
Query: 506 GGTTMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQ 327
GG +PG R+ E+ +LAP+ ++K+ P + W S + L + I++
Sbjct: 327 GGNCKFPGFHKRLSSELRSLAPANWEVKVFEPSDPICFPWKKASHM-PLEHWNANKITRS 385
Query: 326 EYDESGPSIVHRK 288
EY E G +I+ RK
Sbjct: 386 EYSEHGANIMTRK 398
>SPAC630.03 |arp3|act2|actin-like protein Arp3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 427
Score = 41.5 bits (93), Expect = 1e-04
Identities = 23/95 (24%), Positives = 46/95 (48%), Gaps = 14/95 (14%)
Frame = -1
Query: 533 GLVRQHRIAGGTTMYPGIADRMQKEITALAPSTMK--------------IKIIAPPERKY 396
GL + ++GG+T++ +R+Q+++ + + + +I+ ++
Sbjct: 325 GLYKNIVLSGGSTLFKNFGNRLQRDLKRIVDERIHRSEMLSGAKSGGVDVNVISHKRQRN 384
Query: 395 SVWIGGSILASLSTFQQMWISKQEYDESGPSIVHR 291
+VW GGS+LA F +K +Y+E G SI R
Sbjct: 385 AVWFGGSLLAQTPEFGSYCHTKADYEEYGASIARR 419
>SPAC664.02c |||actin-like protein Arp8 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 620
Score = 38.3 bits (85), Expect = 9e-04
Identities = 18/78 (23%), Positives = 35/78 (44%), Gaps = 3/78 (3%)
Frame = -1
Query: 512 IAGGTTMYPGIADRMQKEITALAPSTMKIKIIAPP---ERKYSVWIGGSILASLSTFQQM 342
I GG +PG A +++ I + + I +I PP + ++ W G I + ++
Sbjct: 535 IVGGAGQFPGFAHLLEERIHSKRANIPTISVIPPPRSMDAQFVAWKGACIYNRIRIVSEL 594
Query: 341 WISKQEYDESGPSIVHRK 288
WI ++ G ++ K
Sbjct: 595 WIKNSDWKMLGSRVLQYK 612
>SPAPB1A10.08 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 412
Score = 28.7 bits (61), Expect = 0.72
Identities = 13/47 (27%), Positives = 27/47 (57%)
Frame = -2
Query: 331 NKSTTSLAPPLYTGSASKRTARRCLHSPRPAAQFRLVISVNLIVRKI 191
N+S +SL+ Y+ SK+T+ L+ R + Q +++ I+R++
Sbjct: 241 NRSGSSLSSNFYSSRLSKKTSLASLNKSRASLQHKIMSLSRNIIRRV 287
>SPAC1071.06 |arp9||SWI/SNF and RSC complex subunit
Arp9|Schizosaccharomyces pombe|chr 1|||Manual
Length = 523
Score = 27.9 bits (59), Expect = 1.3
Identities = 12/37 (32%), Positives = 24/37 (64%), Gaps = 3/37 (8%)
Frame = -1
Query: 389 WIGGSILASLSTFQQM---WISKQEYDESGPSIVHRK 288
++GGSI+A S + + +++ +EY + GP+ +H K
Sbjct: 486 FLGGSIVAKTSFNESVSSHYVTLEEYAQHGPTAIHTK 522
>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 574
Score = 27.5 bits (58), Expect = 1.7
Identities = 17/63 (26%), Positives = 29/63 (46%)
Frame = -2
Query: 397 TPYGSVDRSSPPSLPSNKCGSRNKSTTSLAPPLYTGSASKRTARRCLHSPRPAAQFRLVI 218
TP + PPS+PS++ R S ++ APP ++ + PRP A +
Sbjct: 223 TPTSTSAPPIPPSIPSSRPPERVPSLSAPAPPPIPPPSNGTVSSPPNSPPRPIAPVSMNP 282
Query: 217 SVN 209
++N
Sbjct: 283 AIN 285
>SPCC576.05 |||nucear export factor|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1024
Score = 26.6 bits (56), Expect = 2.9
Identities = 19/67 (28%), Positives = 34/67 (50%), Gaps = 2/67 (2%)
Frame = -2
Query: 394 PYGSVDRSS--PPSLPSNKCGSRNKSTTSLAPPLYTGSASKRTARRCLHSPRPAAQFRLV 221
P+ + D SS P +LP+ GS N + T + P + +++K + + P+P + L
Sbjct: 532 PFSATDISSVQPTNLPN---GSTNGTETFIPPVQNSITSNKEAVKPIKNKPKPISFESLS 588
Query: 220 ISVNLIV 200
NLI+
Sbjct: 589 AVGNLII 595
>SPBP4H10.15 |||aconitate hydratase|Schizosaccharomyces pombe|chr
2|||Manual
Length = 905
Score = 26.2 bits (55), Expect = 3.8
Identities = 15/48 (31%), Positives = 21/48 (43%)
Frame = +3
Query: 441 WGESCDFLLHTVGDSRVHGGTTGNTVLAYKSLRMSTSHFMMGVICGLG 584
W D +LH G V GG TG+ + + S S M +C +G
Sbjct: 241 WTTPKDLILHLAGKLTVRGG-TGHIIEYFGPGVASLSCTGMATVCNMG 287
>SPAC16.04 |dus3||tRNA dihydrouridine synthase Dus3
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 617
Score = 25.8 bits (54), Expect = 5.1
Identities = 13/37 (35%), Positives = 20/37 (54%)
Frame = -1
Query: 464 KEITALAPSTMKIKIIAPPERKYSVWIGGSILASLST 354
KEI++ A S + + + P E+ W ILA L+T
Sbjct: 212 KEISSQARSNIALPTLRPQEKNLIDWRDRKILAPLTT 248
>SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces
pombe|chr 1||Partial|Manual
Length = 1887
Score = 25.0 bits (52), Expect = 8.8
Identities = 13/31 (41%), Positives = 16/31 (51%), Gaps = 2/31 (6%)
Frame = -2
Query: 391 YGSVDRSSPPSLPSNKCG--SRNKSTTSLAP 305
Y + SSPP P N G + N +TTS P
Sbjct: 1613 YNASFSSSPPPQPGNSSGMSAMNTNTTSTTP 1643
>SPBC646.02 |cwf11||complexed with Cdc5 protein Cwf11
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1284
Score = 25.0 bits (52), Expect = 8.8
Identities = 11/29 (37%), Positives = 15/29 (51%)
Frame = +3
Query: 330 FRDPHLLEGREGGEDRSTDPYGVLPLWRS 416
F HLL + G+D + + YG L W S
Sbjct: 797 FHQGHLLYLSDEGKDETLERYGTLSSWIS 825
>SPBCPT2R1.08c |tlh2||RecQ type DNA helicase Tlh1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1919
Score = 25.0 bits (52), Expect = 8.8
Identities = 13/31 (41%), Positives = 16/31 (51%), Gaps = 2/31 (6%)
Frame = -2
Query: 391 YGSVDRSSPPSLPSNKCG--SRNKSTTSLAP 305
Y + SSPP P N G + N +TTS P
Sbjct: 1613 YNASFSSSPPPQPGNSSGMSAMNTNTTSTTP 1643
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,636,406
Number of Sequences: 5004
Number of extensions: 54086
Number of successful extensions: 183
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 172
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 177
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 273658928
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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