Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--0650
(620 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_7187| Best HMM Match : No HMM Matches (HMM E-Value=.) 162 2e-40
SB_23734| Best HMM Match : No HMM Matches (HMM E-Value=.) 161 3e-40
SB_23733| Best HMM Match : No HMM Matches (HMM E-Value=.) 161 3e-40
SB_56| Best HMM Match : Actin (HMM E-Value=0) 161 3e-40
SB_56628| Best HMM Match : Actin (HMM E-Value=0) 161 4e-40
SB_7190| Best HMM Match : No HMM Matches (HMM E-Value=.) 159 1e-39
SB_13344| Best HMM Match : Actin (HMM E-Value=1.5e-07) 139 2e-33
SB_6996| Best HMM Match : Actin (HMM E-Value=1.7e-07) 52 5e-07
SB_26136| Best HMM Match : Actin (HMM E-Value=7.2e-10) 50 2e-06
SB_19204| Best HMM Match : No HMM Matches (HMM E-Value=.) 42 5e-04
SB_22343| Best HMM Match : No HMM Matches (HMM E-Value=.) 35 0.046
SB_41148| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.3
SB_50207| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.0
SB_5589| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.0
SB_44878| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.0
SB_36169| Best HMM Match : DUF676 (HMM E-Value=0) 28 7.0
SB_54| Best HMM Match : Actin (HMM E-Value=0) 27 9.3
SB_35821| Best HMM Match : TUDOR (HMM E-Value=0) 27 9.3
>SB_7187| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 349
Score = 162 bits (394), Expect = 2e-40
Identities = 79/100 (79%), Positives = 85/100 (85%)
Frame = -1
Query: 581 ETTYNSHHEVRRGHP*GLVRQHRIAGGTTMYPGIADRMQKEITALAPSTMKIKIIAPPER 402
ETTYNS + L ++GGTTMYPG+ADRMQKEI+ALAPSTMKIKIIAPPER
Sbjct: 250 ETTYNSIMKCDVDIRKDLYANTVMSGGTTMYPGLADRMQKEISALAPSTMKIKIIAPPER 309
Query: 401 KYSVWIGGSILASLSTFQQMWISKQEYDESGPSIVHRKCF 282
KYSVWIGGSILASLSTFQQMWISKQEYDESGP+IVHRKCF
Sbjct: 310 KYSVWIGGSILASLSTFQQMWISKQEYDESGPAIVHRKCF 349
>SB_23734| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 338
Score = 161 bits (392), Expect = 3e-40
Identities = 79/100 (79%), Positives = 84/100 (84%)
Frame = -1
Query: 581 ETTYNSHHEVRRGHP*GLVRQHRIAGGTTMYPGIADRMQKEITALAPSTMKIKIIAPPER 402
ETTYNS + L ++GGTTMYPGIADRMQKEI+ALAP TMKIKIIAPPER
Sbjct: 239 ETTYNSIMKCDVDIRKDLYANTVLSGGTTMYPGIADRMQKEISALAPPTMKIKIIAPPER 298
Query: 401 KYSVWIGGSILASLSTFQQMWISKQEYDESGPSIVHRKCF 282
KYSVWIGGSILASLSTFQQMWISKQEYDESGP+IVHRKCF
Sbjct: 299 KYSVWIGGSILASLSTFQQMWISKQEYDESGPAIVHRKCF 338
>SB_23733| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 376
Score = 161 bits (392), Expect = 3e-40
Identities = 79/100 (79%), Positives = 84/100 (84%)
Frame = -1
Query: 581 ETTYNSHHEVRRGHP*GLVRQHRIAGGTTMYPGIADRMQKEITALAPSTMKIKIIAPPER 402
ETTYNS + L ++GG+TMYPGIADRMQKEIT+LAP TMKIKIIAPPER
Sbjct: 277 ETTYNSIMKCDVDIRKDLYANTVLSGGSTMYPGIADRMQKEITSLAPPTMKIKIIAPPER 336
Query: 401 KYSVWIGGSILASLSTFQQMWISKQEYDESGPSIVHRKCF 282
KYSVWIGGSILASLSTFQQMWISKQEYDESGPSIVHRKCF
Sbjct: 337 KYSVWIGGSILASLSTFQQMWISKQEYDESGPSIVHRKCF 376
>SB_56| Best HMM Match : Actin (HMM E-Value=0)
Length = 375
Score = 161 bits (392), Expect = 3e-40
Identities = 79/100 (79%), Positives = 84/100 (84%)
Frame = -1
Query: 581 ETTYNSHHEVRRGHP*GLVRQHRIAGGTTMYPGIADRMQKEITALAPSTMKIKIIAPPER 402
ETTYNS + L ++GG+TMYPGIADRMQKEIT+LAP TMKIKIIAPPER
Sbjct: 276 ETTYNSIMKCDVDIRKDLYANTVLSGGSTMYPGIADRMQKEITSLAPPTMKIKIIAPPER 335
Query: 401 KYSVWIGGSILASLSTFQQMWISKQEYDESGPSIVHRKCF 282
KYSVWIGGSILASLSTFQQMWISKQEYDESGPSIVHRKCF
Sbjct: 336 KYSVWIGGSILASLSTFQQMWISKQEYDESGPSIVHRKCF 375
>SB_56628| Best HMM Match : Actin (HMM E-Value=0)
Length = 376
Score = 161 bits (391), Expect = 4e-40
Identities = 79/100 (79%), Positives = 84/100 (84%)
Frame = -1
Query: 581 ETTYNSHHEVRRGHP*GLVRQHRIAGGTTMYPGIADRMQKEITALAPSTMKIKIIAPPER 402
ETTYNS + L ++GG+TMYPGIADRMQKEI+ALAP TMKIKIIAPPER
Sbjct: 277 ETTYNSIMKCDVDIRKDLYANTVLSGGSTMYPGIADRMQKEISALAPPTMKIKIIAPPER 336
Query: 401 KYSVWIGGSILASLSTFQQMWISKQEYDESGPSIVHRKCF 282
KYSVWIGGSILASLSTFQQMWISKQEYDESGPSIVHRKCF
Sbjct: 337 KYSVWIGGSILASLSTFQQMWISKQEYDESGPSIVHRKCF 376
>SB_7190| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 375
Score = 159 bits (387), Expect = 1e-39
Identities = 78/100 (78%), Positives = 84/100 (84%)
Frame = -1
Query: 581 ETTYNSHHEVRRGHP*GLVRQHRIAGGTTMYPGIADRMQKEITALAPSTMKIKIIAPPER 402
ETTYNS + L ++GG+TM+PGIADRMQKEI+ALAP TMKIKIIAPPER
Sbjct: 276 ETTYNSIMKCDVDIRKDLYANTVLSGGSTMFPGIADRMQKEISALAPPTMKIKIIAPPER 335
Query: 401 KYSVWIGGSILASLSTFQQMWISKQEYDESGPSIVHRKCF 282
KYSVWIGGSILASLSTFQQMWISKQEYDESGPSIVHRKCF
Sbjct: 336 KYSVWIGGSILASLSTFQQMWISKQEYDESGPSIVHRKCF 375
>SB_13344| Best HMM Match : Actin (HMM E-Value=1.5e-07)
Length = 149
Score = 139 bits (336), Expect = 2e-33
Identities = 61/77 (79%), Positives = 71/77 (92%)
Frame = -1
Query: 512 IAGGTTMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWIS 333
++GG+TM+PGIADRMQKEI LA ++MK+K+IAPPERKYSVWIGGSILASLSTFQQMWI+
Sbjct: 73 LSGGSTMFPGIADRMQKEIAMLANASMKVKVIAPPERKYSVWIGGSILASLSTFQQMWIA 132
Query: 332 KQEYDESGPSIVHRKCF 282
K+EY E GP IVHRKCF
Sbjct: 133 KEEYHEYGPPIVHRKCF 149
Score = 37.9 bits (84), Expect = 0.007
Identities = 16/18 (88%), Positives = 17/18 (94%)
Frame = -2
Query: 562 IMKCDVDIRKDLYANTVL 509
IMKCDVDIRKDLY+N VL
Sbjct: 56 IMKCDVDIRKDLYSNCVL 73
>SB_6996| Best HMM Match : Actin (HMM E-Value=1.7e-07)
Length = 240
Score = 51.6 bits (118), Expect = 5e-07
Identities = 23/61 (37%), Positives = 39/61 (63%), Gaps = 3/61 (4%)
Frame = -1
Query: 533 GLVRQHRIAGGTTMYPGIADRMQKEITALAPSTMKIKIIA---PPERKYSVWIGGSILAS 363
GL + GG T+ G +R+ +E+ + P +M++K+I+ E++++ WIGGSILAS
Sbjct: 170 GLFNSVIVTGGNTLLQGFVERLNRELVSKTPPSMRLKLISNNSSVEKRFNPWIGGSILAS 229
Query: 362 L 360
L
Sbjct: 230 L 230
>SB_26136| Best HMM Match : Actin (HMM E-Value=7.2e-10)
Length = 543
Score = 49.6 bits (113), Expect = 2e-06
Identities = 30/97 (30%), Positives = 50/97 (51%), Gaps = 16/97 (16%)
Frame = -1
Query: 512 IAGGTTMYPGIADRMQKEITA----------------LAPSTMKIKIIAPPERKYSVWIG 381
++GG+TM+ R+Q++I + P ++ ++I+ ++Y+VW G
Sbjct: 248 LSGGSTMFRDFGRRLQRDIKRTVDARLKMSETLSGGRIKPKPIETQVISHHMQRYAVWFG 307
Query: 380 GSILASLSTFQQMWISKQEYDESGPSIVHRKCF*THR 270
GS+LAS F + +K +YDE GPSI F HR
Sbjct: 308 GSMLASTPEFYSVCHTKADYDEHGPSICRHNPF-LHR 343
>SB_19204| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 411
Score = 41.5 bits (93), Expect = 5e-04
Identities = 17/42 (40%), Positives = 29/42 (69%), Gaps = 1/42 (2%)
Frame = -1
Query: 431 KIKIIAPPERKYSVWIGGSILAS-LSTFQQMWISKQEYDESG 309
KI+I PP RK+ V++GG++LA + W++++EY+E G
Sbjct: 358 KIRIEDPPRRKHMVFMGGAVLADIMKDKDSFWMTRKEYEEKG 399
>SB_22343| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 245
Score = 35.1 bits (77), Expect = 0.046
Identities = 21/75 (28%), Positives = 33/75 (44%), Gaps = 9/75 (12%)
Frame = -1
Query: 512 IAGGTTMYPGIADRMQKEITALAPS--------TMKIKIIAPP-ERKYSVWIGGSILASL 360
+ GGT M PG R+ +EI L S +K+ PP + W+GG+I SL
Sbjct: 83 LIGGTAMTPGFKHRLMQEIYLLLQSPKYKDKLFIKTVKMHQPPVNANITAWLGGAIFGSL 142
Query: 359 STFQQMWISKQEYDE 315
+++ Y +
Sbjct: 143 EVLADRSTTRERYQQ 157
>SB_41148| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 583
Score = 30.3 bits (65), Expect = 1.3
Identities = 12/35 (34%), Positives = 19/35 (54%)
Frame = -2
Query: 328 KSTTSLAPPLYTGSASKRTARRCLHSPRPAAQFRL 224
K+T P++T S K+T R C+ P P + R+
Sbjct: 18 KNTLRFIMPVFTRSGRKKTNRTCIEDPTPQTERRV 52
>SB_50207| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 318
Score = 29.1 bits (62), Expect = 3.0
Identities = 12/37 (32%), Positives = 15/37 (40%)
Frame = -2
Query: 358 LPSNKCGSRNKSTTSLAPPLYTGSASKRTARRCLHSP 248
L C SR K P Y G RT ++C + P
Sbjct: 118 LVKRTCNSRKKKKPEKRPSSYNGDTDYRTRKQCRYEP 154
>SB_5589| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 583
Score = 29.1 bits (62), Expect = 3.0
Identities = 15/40 (37%), Positives = 20/40 (50%)
Frame = -2
Query: 400 STPYGSVDRSSPPSLPSNKCGSRNKSTTSLAPPLYTGSAS 281
STP +V PP PSN+ + +K S +P T S S
Sbjct: 217 STPQATVQTPPPPPEPSNEPSTSSKPKASPSPSSITTSTS 256
>SB_44878| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1338
Score = 28.7 bits (61), Expect = 4.0
Identities = 15/51 (29%), Positives = 23/51 (45%)
Frame = -2
Query: 385 SVDRSSPPSLPSNKCGSRNKSTTSLAPPLYTGSASKRTARRCLHSPRPAAQ 233
S D+ P +PS R S+ +APP S +K+ ++ S P Q
Sbjct: 445 SKDKKGPSKVPSKDTRRRPTSSGKIAPPPRQTSPTKQATKKTTPSRPPPTQ 495
>SB_36169| Best HMM Match : DUF676 (HMM E-Value=0)
Length = 2442
Score = 27.9 bits (59), Expect = 7.0
Identities = 17/39 (43%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
Frame = -2
Query: 382 VDRSSPPSLPSNKCGSRNKSTTSLAPPLYTGSA-SKRTA 269
VD+S P SLP+ K G + S P GS+ SK TA
Sbjct: 1939 VDKSEPGSLPTVKFGVTTTADASSMPKFQFGSSGSKDTA 1977
>SB_54| Best HMM Match : Actin (HMM E-Value=0)
Length = 2486
Score = 27.5 bits (58), Expect = 9.3
Identities = 10/18 (55%), Positives = 14/18 (77%)
Frame = -2
Query: 562 IMKCDVDIRKDLYANTVL 509
I KCD+D+R +L+ N VL
Sbjct: 2327 IKKCDIDLRAELFHNIVL 2344
>SB_35821| Best HMM Match : TUDOR (HMM E-Value=0)
Length = 754
Score = 27.5 bits (58), Expect = 9.3
Identities = 18/68 (26%), Positives = 31/68 (45%), Gaps = 6/68 (8%)
Frame = -2
Query: 400 STPYGSVDRSSPPSLPSNKCGSRNKSTTSLAPPLYTG------SASKRTARRCLHSPRPA 239
S YG +S+P S+ +NK R + PPL +G ++ K A + P
Sbjct: 571 SAGYGKEAKSAPVSIAANKPFIRPSQDQQVMPPLISGIQAMCETSPKEQAIASANLPAVG 630
Query: 238 AQFRLVIS 215
F+L+++
Sbjct: 631 ETFQLIVT 638
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,799,378
Number of Sequences: 59808
Number of extensions: 470408
Number of successful extensions: 1930
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 1810
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1921
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1536271375
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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