Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--0650
(620 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z81584-6|CAB04678.1| 376|Caenorhabditis elegans Hypothetical pr... 165 3e-41
Z81584-5|CAB04675.1| 376|Caenorhabditis elegans Hypothetical pr... 165 3e-41
Z81584-4|CAB04676.1| 376|Caenorhabditis elegans Hypothetical pr... 165 3e-41
X16799-1|CAA34720.1| 376|Caenorhabditis elegans actin protein. 165 3e-41
X16797-1|CAA34718.1| 376|Caenorhabditis elegans actin protein. 165 3e-41
X16796-1|CAA34717.1| 376|Caenorhabditis elegans actin protein. 165 3e-41
U64601-7|AAK77622.1| 332|Caenorhabditis elegans Actin protein 4... 165 3e-41
U64601-6|AAT92068.1| 362|Caenorhabditis elegans Actin protein 4... 165 3e-41
U64601-5|AAB04575.1| 376|Caenorhabditis elegans Actin protein 4... 165 3e-41
X16798-1|CAA34719.1| 375|Caenorhabditis elegans actin protein. 159 2e-39
Z83241-1|CAB05817.1| 375|Caenorhabditis elegans Hypothetical pr... 156 1e-38
AC006833-3|AAF60947.2| 436|Caenorhabditis elegans Hypothetical ... 93 1e-19
AL132949-19|CAB70110.2| 374|Caenorhabditis elegans Hypothetical... 86 2e-17
Z71181-1|CAA94894.1| 395|Caenorhabditis elegans Hypothetical pr... 67 1e-11
U40799-8|AAA81487.1| 552|Caenorhabditis elegans Hypothetical pr... 56 3e-08
AC024200-9|AAF36012.1| 425|Caenorhabditis elegans Arp2/3 comple... 54 8e-08
Z46676-5|CAA86667.3| 418|Caenorhabditis elegans Hypothetical pr... 37 0.010
U24189-2|AAC47513.1| 418|Caenorhabditis elegans actin-related p... 37 0.010
AL021497-12|CAA16402.2| 1222|Caenorhabditis elegans Hypothetical... 34 0.094
U40426-4|AAP40527.1| 144|Caenorhabditis elegans Diacylglycerol ... 31 0.50
U40426-3|AAP40528.1| 351|Caenorhabditis elegans Diacylglycerol ... 31 0.50
U40426-2|AAP40526.1| 536|Caenorhabditis elegans Diacylglycerol ... 31 0.50
U53344-4|AAA96225.2| 575|Caenorhabditis elegans Hypothetical pr... 30 1.5
Z92826-6|CAM06583.1| 111|Caenorhabditis elegans Hypothetical pr... 28 6.2
U42436-1|AAF99891.1| 305|Caenorhabditis elegans Hypothetical pr... 27 8.2
>Z81584-6|CAB04678.1| 376|Caenorhabditis elegans Hypothetical
protein T04C12.6 protein.
Length = 376
Score = 165 bits (400), Expect = 3e-41
Identities = 81/100 (81%), Positives = 85/100 (85%)
Frame = -1
Query: 581 ETTYNSHHEVRRGHP*GLVRQHRIAGGTTMYPGIADRMQKEITALAPSTMKIKIIAPPER 402
ET+YNS + L ++GGTTMYPGIADRMQKEITALAPSTMKIKIIAPPER
Sbjct: 277 ETSYNSIMKCDIDIRKDLYANTVLSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPPER 336
Query: 401 KYSVWIGGSILASLSTFQQMWISKQEYDESGPSIVHRKCF 282
KYSVWIGGSILASLSTFQQMWISKQEYDESGPSIVHRKCF
Sbjct: 337 KYSVWIGGSILASLSTFQQMWISKQEYDESGPSIVHRKCF 376
>Z81584-5|CAB04675.1| 376|Caenorhabditis elegans Hypothetical
protein T04C12.5 protein.
Length = 376
Score = 165 bits (400), Expect = 3e-41
Identities = 81/100 (81%), Positives = 85/100 (85%)
Frame = -1
Query: 581 ETTYNSHHEVRRGHP*GLVRQHRIAGGTTMYPGIADRMQKEITALAPSTMKIKIIAPPER 402
ET+YNS + L ++GGTTMYPGIADRMQKEITALAPSTMKIKIIAPPER
Sbjct: 277 ETSYNSIMKCDIDIRKDLYANTVLSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPPER 336
Query: 401 KYSVWIGGSILASLSTFQQMWISKQEYDESGPSIVHRKCF 282
KYSVWIGGSILASLSTFQQMWISKQEYDESGPSIVHRKCF
Sbjct: 337 KYSVWIGGSILASLSTFQQMWISKQEYDESGPSIVHRKCF 376
>Z81584-4|CAB04676.1| 376|Caenorhabditis elegans Hypothetical
protein T04C12.4 protein.
Length = 376
Score = 165 bits (400), Expect = 3e-41
Identities = 81/100 (81%), Positives = 85/100 (85%)
Frame = -1
Query: 581 ETTYNSHHEVRRGHP*GLVRQHRIAGGTTMYPGIADRMQKEITALAPSTMKIKIIAPPER 402
ET+YNS + L ++GGTTMYPGIADRMQKEITALAPSTMKIKIIAPPER
Sbjct: 277 ETSYNSIMKCDIDIRKDLYANTVLSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPPER 336
Query: 401 KYSVWIGGSILASLSTFQQMWISKQEYDESGPSIVHRKCF 282
KYSVWIGGSILASLSTFQQMWISKQEYDESGPSIVHRKCF
Sbjct: 337 KYSVWIGGSILASLSTFQQMWISKQEYDESGPSIVHRKCF 376
>X16799-1|CAA34720.1| 376|Caenorhabditis elegans actin protein.
Length = 376
Score = 165 bits (400), Expect = 3e-41
Identities = 81/100 (81%), Positives = 85/100 (85%)
Frame = -1
Query: 581 ETTYNSHHEVRRGHP*GLVRQHRIAGGTTMYPGIADRMQKEITALAPSTMKIKIIAPPER 402
ET+YNS + L ++GGTTMYPGIADRMQKEITALAPSTMKIKIIAPPER
Sbjct: 277 ETSYNSIMKCDIDIRKDLYANTVLSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPPER 336
Query: 401 KYSVWIGGSILASLSTFQQMWISKQEYDESGPSIVHRKCF 282
KYSVWIGGSILASLSTFQQMWISKQEYDESGPSIVHRKCF
Sbjct: 337 KYSVWIGGSILASLSTFQQMWISKQEYDESGPSIVHRKCF 376
>X16797-1|CAA34718.1| 376|Caenorhabditis elegans actin protein.
Length = 376
Score = 165 bits (400), Expect = 3e-41
Identities = 81/100 (81%), Positives = 85/100 (85%)
Frame = -1
Query: 581 ETTYNSHHEVRRGHP*GLVRQHRIAGGTTMYPGIADRMQKEITALAPSTMKIKIIAPPER 402
ET+YNS + L ++GGTTMYPGIADRMQKEITALAPSTMKIKIIAPPER
Sbjct: 277 ETSYNSIMKCDIDIRKDLYANTVLSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPPER 336
Query: 401 KYSVWIGGSILASLSTFQQMWISKQEYDESGPSIVHRKCF 282
KYSVWIGGSILASLSTFQQMWISKQEYDESGPSIVHRKCF
Sbjct: 337 KYSVWIGGSILASLSTFQQMWISKQEYDESGPSIVHRKCF 376
>X16796-1|CAA34717.1| 376|Caenorhabditis elegans actin protein.
Length = 376
Score = 165 bits (400), Expect = 3e-41
Identities = 81/100 (81%), Positives = 85/100 (85%)
Frame = -1
Query: 581 ETTYNSHHEVRRGHP*GLVRQHRIAGGTTMYPGIADRMQKEITALAPSTMKIKIIAPPER 402
ET+YNS + L ++GGTTMYPGIADRMQKEITALAPSTMKIKIIAPPER
Sbjct: 277 ETSYNSIMKCDIDIRKDLYANTVLSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPPER 336
Query: 401 KYSVWIGGSILASLSTFQQMWISKQEYDESGPSIVHRKCF 282
KYSVWIGGSILASLSTFQQMWISKQEYDESGPSIVHRKCF
Sbjct: 337 KYSVWIGGSILASLSTFQQMWISKQEYDESGPSIVHRKCF 376
>U64601-7|AAK77622.1| 332|Caenorhabditis elegans Actin protein 4,
isoform b protein.
Length = 332
Score = 165 bits (400), Expect = 3e-41
Identities = 81/100 (81%), Positives = 85/100 (85%)
Frame = -1
Query: 581 ETTYNSHHEVRRGHP*GLVRQHRIAGGTTMYPGIADRMQKEITALAPSTMKIKIIAPPER 402
ET+YNS + L ++GGTTMYPGIADRMQKEITALAPSTMKIKIIAPPER
Sbjct: 233 ETSYNSIMKCDIDIRKDLYANTVLSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPPER 292
Query: 401 KYSVWIGGSILASLSTFQQMWISKQEYDESGPSIVHRKCF 282
KYSVWIGGSILASLSTFQQMWISKQEYDESGPSIVHRKCF
Sbjct: 293 KYSVWIGGSILASLSTFQQMWISKQEYDESGPSIVHRKCF 332
>U64601-6|AAT92068.1| 362|Caenorhabditis elegans Actin protein 4,
isoform c protein.
Length = 362
Score = 165 bits (400), Expect = 3e-41
Identities = 81/100 (81%), Positives = 85/100 (85%)
Frame = -1
Query: 581 ETTYNSHHEVRRGHP*GLVRQHRIAGGTTMYPGIADRMQKEITALAPSTMKIKIIAPPER 402
ET+YNS + L ++GGTTMYPGIADRMQKEITALAPSTMKIKIIAPPER
Sbjct: 263 ETSYNSIMKCDIDIRKDLYANTVLSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPPER 322
Query: 401 KYSVWIGGSILASLSTFQQMWISKQEYDESGPSIVHRKCF 282
KYSVWIGGSILASLSTFQQMWISKQEYDESGPSIVHRKCF
Sbjct: 323 KYSVWIGGSILASLSTFQQMWISKQEYDESGPSIVHRKCF 362
>U64601-5|AAB04575.1| 376|Caenorhabditis elegans Actin protein 4,
isoform a protein.
Length = 376
Score = 165 bits (400), Expect = 3e-41
Identities = 81/100 (81%), Positives = 85/100 (85%)
Frame = -1
Query: 581 ETTYNSHHEVRRGHP*GLVRQHRIAGGTTMYPGIADRMQKEITALAPSTMKIKIIAPPER 402
ET+YNS + L ++GGTTMYPGIADRMQKEITALAPSTMKIKIIAPPER
Sbjct: 277 ETSYNSIMKCDIDIRKDLYANTVLSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPPER 336
Query: 401 KYSVWIGGSILASLSTFQQMWISKQEYDESGPSIVHRKCF 282
KYSVWIGGSILASLSTFQQMWISKQEYDESGPSIVHRKCF
Sbjct: 337 KYSVWIGGSILASLSTFQQMWISKQEYDESGPSIVHRKCF 376
>X16798-1|CAA34719.1| 375|Caenorhabditis elegans actin protein.
Length = 375
Score = 159 bits (385), Expect = 2e-39
Identities = 80/100 (80%), Positives = 84/100 (84%)
Frame = -1
Query: 581 ETTYNSHHEVRRGHP*GLVRQHRIAGGTTMYPGIADRMQKEITALAPSTMKIKIIAPPER 402
ET+YNS + L ++GGTTMYPGIADRMQKEITALAP TMKIKIIAPPER
Sbjct: 277 ETSYNSIMKCDIDIRKDLYANTVLSGGTTMYPGIADRMQKEITALAP-TMKIKIIAPPER 335
Query: 401 KYSVWIGGSILASLSTFQQMWISKQEYDESGPSIVHRKCF 282
KYSVWIGGSILASLSTFQQMWISKQEYDESGPSIVHRKCF
Sbjct: 336 KYSVWIGGSILASLSTFQQMWISKQEYDESGPSIVHRKCF 375
>Z83241-1|CAB05817.1| 375|Caenorhabditis elegans Hypothetical
protein T25C8.2 protein.
Length = 375
Score = 156 bits (378), Expect = 1e-38
Identities = 77/100 (77%), Positives = 82/100 (82%)
Frame = -1
Query: 581 ETTYNSHHEVRRGHP*GLVRQHRIAGGTTMYPGIADRMQKEITALAPSTMKIKIIAPPER 402
ETTY S + L ++GGT+M+PGIADRMQKEI LAPSTMKIKIIAPPER
Sbjct: 276 ETTYQSIMKCDVDIRKDLYANTVLSGGTSMFPGIADRMQKEIQHLAPSTMKIKIIAPPER 335
Query: 401 KYSVWIGGSILASLSTFQQMWISKQEYDESGPSIVHRKCF 282
KYSVWIGGSILASLSTFQQMWISKQEYDESGPSIVHRKCF
Sbjct: 336 KYSVWIGGSILASLSTFQQMWISKQEYDESGPSIVHRKCF 375
>AC006833-3|AAF60947.2| 436|Caenorhabditis elegans Hypothetical
protein ZK616.4 protein.
Length = 436
Score = 93.5 bits (222), Expect = 1e-19
Identities = 41/79 (51%), Positives = 53/79 (67%), Gaps = 3/79 (3%)
Frame = -1
Query: 512 IAGGTTMYPGIADRMQKEITALAPSTMKIKIIAPP---ERKYSVWIGGSILASLSTFQQM 342
+ GG ++ G +R+ + P T+K+++ A P ERKY WIGGSIL SL TFQQM
Sbjct: 357 VTGGNSLILGFTERLNYALATKCPPTIKLRVFAAPTQAERKYGAWIGGSILGSLGTFQQM 416
Query: 341 WISKQEYDESGPSIVHRKC 285
W+SK EYDESG SIV +KC
Sbjct: 417 WVSKAEYDESGKSIVEKKC 435
>AL132949-19|CAB70110.2| 374|Caenorhabditis elegans Hypothetical
protein Y53F4B.22 protein.
Length = 374
Score = 86.2 bits (204), Expect = 2e-17
Identities = 36/77 (46%), Positives = 55/77 (71%)
Frame = -1
Query: 512 IAGGTTMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWIS 333
++GGTT++ G DR+ E+ +AP+ KI+I A ER WIGGSI+ASL TF++MW+
Sbjct: 298 LSGGTTLFKGFGDRLLGEMRKIAPADGKIRISASQERNSLTWIGGSIVASLDTFRKMWLG 357
Query: 332 KQEYDESGPSIVHRKCF 282
K+EY++ G S +H++ F
Sbjct: 358 KKEYEDMGASAMHKRFF 374
Score = 32.7 bits (71), Expect = 0.22
Identities = 13/18 (72%), Positives = 16/18 (88%)
Frame = -2
Query: 562 IMKCDVDIRKDLYANTVL 509
IMKCDVD+R+ LY+N VL
Sbjct: 281 IMKCDVDLRQTLYSNIVL 298
>Z71181-1|CAA94894.1| 395|Caenorhabditis elegans Hypothetical
protein K07C5.1 protein.
Length = 395
Score = 66.9 bits (156), Expect = 1e-11
Identities = 35/81 (43%), Positives = 51/81 (62%), Gaps = 13/81 (16%)
Frame = -1
Query: 512 IAGGTTMYPGIADRMQKEITAL-----------APSTMKIKIIAPPERKYSVWIGGSILA 366
++GGTTMYPG+ R++KE+ L A KI+I APP RK+ V++GG++LA
Sbjct: 303 LSGGTTMYPGLPSRLEKELKQLYLDRVLHGNTDAFQKFKIRIEAPPSRKHMVFLGGAVLA 362
Query: 365 SL--STFQQMWISKQEYDESG 309
+L Q W+SK+EY+E G
Sbjct: 363 NLMKDRDQDFWVSKKEYEEGG 383
>U40799-8|AAA81487.1| 552|Caenorhabditis elegans Hypothetical
protein F42C5.9 protein.
Length = 552
Score = 55.6 bits (128), Expect = 3e-08
Identities = 24/69 (34%), Positives = 45/69 (65%)
Frame = -1
Query: 530 LVRQHRIAGGTTMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILASLSTF 351
L R +AGG ++ PGIA+++++E++ + P+T+ ++ P R + ++G I+AS STF
Sbjct: 471 LYRNIYLAGGASLMPGIAEKLEQELSTVVPNTIHTQVNISPWRYNAAYLGAQIVASASTF 530
Query: 350 QQMWISKQE 324
+ IS Q+
Sbjct: 531 EDSCISLQQ 539
>AC024200-9|AAF36012.1| 425|Caenorhabditis elegans Arp2/3 complex
component protein 1 protein.
Length = 425
Score = 54.0 bits (124), Expect = 8e-08
Identities = 31/94 (32%), Positives = 52/94 (55%), Gaps = 16/94 (17%)
Frame = -1
Query: 533 GLVRQHRIAGGTTMYPGIADRMQKEITALA----------------PSTMKIKIIAPPER 402
GL ++GG+TM+ A ++Q+++ L+ P + +++I+ +
Sbjct: 321 GLYENIVLSGGSTMFKDFARKLQRDVKRLSDGRLQMSETLSGGRLKPKPIDVQVISHKMQ 380
Query: 401 KYSVWIGGSILASLSTFQQMWISKQEYDESGPSI 300
+Y+VW GGS+LAS S F Q+ +K EY E GPSI
Sbjct: 381 RYAVWFGGSMLASTSEFYQVSHTKAEYMERGPSI 414
>Z46676-5|CAA86667.3| 418|Caenorhabditis elegans Hypothetical
protein C08B11.6 protein.
Length = 418
Score = 37.1 bits (82), Expect = 0.010
Identities = 20/82 (24%), Positives = 44/82 (53%), Gaps = 3/82 (3%)
Frame = -1
Query: 512 IAGGTTMYPGIADRMQKEITALAPSTMKIKI---IAPPERKYSVWIGGSILASLSTFQQM 342
+ GG++ +PG +R+++E+ ++ P+ + + + P+ W G L L+ +
Sbjct: 314 VIGGSSCFPGFRERLEREVRSMLPAEYGLNVSNDVINPQT--HSWHCGQEL--LTASKVP 369
Query: 341 WISKQEYDESGPSIVHRKCF*T 276
WI+++++DE G S+ F T
Sbjct: 370 WINRKDWDERGDSLEFSNFFQT 391
>U24189-2|AAC47513.1| 418|Caenorhabditis elegans actin-related
protein-like protein.
Length = 418
Score = 37.1 bits (82), Expect = 0.010
Identities = 20/82 (24%), Positives = 44/82 (53%), Gaps = 3/82 (3%)
Frame = -1
Query: 512 IAGGTTMYPGIADRMQKEITALAPSTMKIKI---IAPPERKYSVWIGGSILASLSTFQQM 342
+ GG++ +PG +R+++E+ ++ P+ + + + P+ W G L L+ +
Sbjct: 314 VIGGSSCFPGFRERLEREVRSMLPAEYGLNVSNDVINPQT--HSWHCGQEL--LTASKVP 369
Query: 341 WISKQEYDESGPSIVHRKCF*T 276
WI+++++DE G S+ F T
Sbjct: 370 WINRKDWDERGDSLEFSNFFQT 391
>AL021497-12|CAA16402.2| 1222|Caenorhabditis elegans Hypothetical
protein Y51A2D.15 protein.
Length = 1222
Score = 33.9 bits (74), Expect = 0.094
Identities = 23/74 (31%), Positives = 39/74 (52%), Gaps = 2/74 (2%)
Frame = -2
Query: 400 STPYGSVDRSSPPSLPSNKCG-SRNKSTTSLAPPLY-TGSASKRTARRCLHSPRPAAQFR 227
S+ Y + +RSSPP ++ C S + +T PL+ + S SK +A + SP P++ F
Sbjct: 1128 SSVYSADERSSPPLAGNSTCSVSTSSDSTPDECPLHGSRSFSKISALKIQSSPSPSSSFS 1187
Query: 226 LVISVNLIVRKILL 185
+S+ + LL
Sbjct: 1188 RFLSLRRTAKPSLL 1201
>U40426-4|AAP40527.1| 144|Caenorhabditis elegans Diacylglycerol
kinase protein 2,isoform b protein.
Length = 144
Score = 31.5 bits (68), Expect = 0.50
Identities = 12/24 (50%), Positives = 15/24 (62%)
Frame = +3
Query: 387 PYGVLPLWRSNDLNLHCRWGESCD 458
P VLPL NDL+ +WG+ CD
Sbjct: 97 PVAVLPLGTGNDLSRLLKWGKKCD 120
>U40426-3|AAP40528.1| 351|Caenorhabditis elegans Diacylglycerol
kinase protein 2,isoform c protein.
Length = 351
Score = 31.5 bits (68), Expect = 0.50
Identities = 12/24 (50%), Positives = 15/24 (62%)
Frame = +3
Query: 387 PYGVLPLWRSNDLNLHCRWGESCD 458
P VLPL NDL+ +WG+ CD
Sbjct: 97 PVAVLPLGTGNDLSRLLKWGKKCD 120
>U40426-2|AAP40526.1| 536|Caenorhabditis elegans Diacylglycerol
kinase protein 2,isoform a protein.
Length = 536
Score = 31.5 bits (68), Expect = 0.50
Identities = 12/24 (50%), Positives = 15/24 (62%)
Frame = +3
Query: 387 PYGVLPLWRSNDLNLHCRWGESCD 458
P VLPL NDL+ +WG+ CD
Sbjct: 282 PVAVLPLGTGNDLSRLLKWGKKCD 305
>U53344-4|AAA96225.2| 575|Caenorhabditis elegans Hypothetical
protein T07H6.5 protein.
Length = 575
Score = 29.9 bits (64), Expect = 1.5
Identities = 12/36 (33%), Positives = 19/36 (52%)
Frame = -3
Query: 555 SATWTSVRTCTPTPYCRWYHHVPWNRRPYAKGNHSS 448
++TW+ V C+P W VP R ++K +H S
Sbjct: 364 NSTWSHVPVCSPLSCHNWPPRVPHARILFSKSSHGS 399
>Z92826-6|CAM06583.1| 111|Caenorhabditis elegans Hypothetical
protein C18D11.9 protein.
Length = 111
Score = 27.9 bits (59), Expect = 6.2
Identities = 14/35 (40%), Positives = 18/35 (51%), Gaps = 3/35 (8%)
Frame = -3
Query: 549 TWTSVRTCTPTPYCR---WYHHVPWNRRPYAKGNH 454
TWT V + TP+ R W ++ W RPY G H
Sbjct: 40 TWTKVGA-SQTPHIRTRRWGYYGGWGYRPYGWGYH 73
>U42436-1|AAF99891.1| 305|Caenorhabditis elegans Hypothetical
protein C49H3.8 protein.
Length = 305
Score = 27.5 bits (58), Expect = 8.2
Identities = 20/74 (27%), Positives = 38/74 (51%), Gaps = 10/74 (13%)
Frame = -1
Query: 512 IAGGTTMYPGIADRMQKEITAL-APSTMKIKIIAP----PERK----YSVWIGGSILASL 360
+ GG + PG+ R+++EI + + KI +I E K + W+G S+L SL
Sbjct: 215 LTGGVSTIPGLMKRLEQEIQVIDEKNNSKIAVIVKFYQFSEIKNTPLFVSWLGASLLGSL 274
Query: 359 -STFQQMWISKQEY 321
T ++ ++ +E+
Sbjct: 275 RETIERKSLTLEEW 288
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,062,260
Number of Sequences: 27780
Number of extensions: 329684
Number of successful extensions: 980
Number of sequences better than 10.0: 25
Number of HSP's better than 10.0 without gapping: 907
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 964
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1353389824
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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