Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0649
         (563 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY155490-1|AAO12861.1|  342|Apis mellifera Ammar1 transposase pr...    24   1.2  
AB194707-1|BAD69622.1|  247|Apis mellifera heme oxygenase protein.     22   4.9  
U70841-1|AAC47455.1|  377|Apis mellifera ultraviolet sensitive o...    21   6.5  
AF004168-1|AAC13417.1|  377|Apis mellifera blue-sensitive opsin ...    21   6.5  
DQ468657-1|ABE02558.1|  322|Apis mellifera 1,4,5-trisphosphate r...    21   8.6  
DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholi...    21   8.6  
AB006152-1|BAA24504.1|  178|Apis mellifera inositol 1,4,5-tripho...    21   8.6  

>AY155490-1|AAO12861.1|  342|Apis mellifera Ammar1 transposase
          protein.
          Length = 342

 Score = 23.8 bits (49), Expect = 1.2
 Identities = 9/16 (56%), Positives = 12/16 (75%)
 Frame = -1

Query: 65 DHYSNILFFFFCKIKN 18
          +HY +IL F+F K KN
Sbjct: 6  EHYRHILLFYFRKGKN 21


>AB194707-1|BAD69622.1|  247|Apis mellifera heme oxygenase protein.
          Length = 247

 Score = 21.8 bits (44), Expect = 4.9
 Identities = 7/20 (35%), Positives = 14/20 (70%)
 Frame = +1

Query: 142 LLLKKNICLLIWLENIFMVF 201
           ++LKK +C +I +  +F+ F
Sbjct: 221 IILKKTVCFVIPIMLLFLAF 240


>U70841-1|AAC47455.1|  377|Apis mellifera ultraviolet sensitive
           opsin protein.
          Length = 377

 Score = 21.4 bits (43), Expect = 6.5
 Identities = 8/16 (50%), Positives = 11/16 (68%)
 Frame = -2

Query: 88  LWNYVVLPITILTFYS 41
           +W YV+  I I+ FYS
Sbjct: 226 IWAYVIPLIFIILFYS 241


>AF004168-1|AAC13417.1|  377|Apis mellifera blue-sensitive opsin
           protein.
          Length = 377

 Score = 21.4 bits (43), Expect = 6.5
 Identities = 8/16 (50%), Positives = 11/16 (68%)
 Frame = -2

Query: 88  LWNYVVLPITILTFYS 41
           +W YV+  I I+ FYS
Sbjct: 226 IWAYVIPLIFIILFYS 241


>DQ468657-1|ABE02558.1|  322|Apis mellifera 1,4,5-trisphosphate
           receptor protein.
          Length = 322

 Score = 21.0 bits (42), Expect = 8.6
 Identities = 6/12 (50%), Positives = 10/12 (83%)
 Frame = -3

Query: 321 LEYRVLCILQLF 286
           L+YR+ C+L +F
Sbjct: 63  LDYRISCLLSIF 74


>DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholine
           receptor beta1subunit protein.
          Length = 520

 Score = 21.0 bits (42), Expect = 8.6
 Identities = 8/17 (47%), Positives = 9/17 (52%)
 Frame = -2

Query: 85  WNYVVLPITILTFYSFF 35
           W YV + I  L  Y FF
Sbjct: 471 WKYVAMVIDRLQLYIFF 487


>AB006152-1|BAA24504.1|  178|Apis mellifera inositol
           1,4,5-triphosphate recepter protein.
          Length = 178

 Score = 21.0 bits (42), Expect = 8.6
 Identities = 6/12 (50%), Positives = 10/12 (83%)
 Frame = -3

Query: 321 LEYRVLCILQLF 286
           L+YR+ C+L +F
Sbjct: 31  LDYRISCLLSIF 42


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 152,983
Number of Sequences: 438
Number of extensions: 3136
Number of successful extensions: 7
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 16317903
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)