BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= ce--0648 (604 letters) Database: spombe 5004 sequences; 2,362,478 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SPBC32H8.12c |act1|cps8|actin |Schizosaccharomyces pombe|chr 2||... 279 2e-76 SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces pomb... 147 1e-36 SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex s... 138 4e-34 SPAC630.03 |arp3|act2|actin-like protein Arp3|Schizosaccharomyce... 113 2e-26 SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomy... 87 2e-18 SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces pombe... 84 2e-17 SPAC23D3.09 |arp42|arp4|SWI/SNF and RSC complex subunit Arp42|Sc... 77 3e-15 SPCC550.12 |arp6||actin-like protein Arp6|Schizosaccharomyces po... 35 0.008 SPAC1071.06 |arp9||SWI/SNF and RSC complex subunit Arp9|Schizosa... 35 0.011 SPAC26A3.05 |chc1||clathrin heavy chain Chc1 |Schizosaccharomyce... 32 0.074 SPAC56F8.02 |||AMP binding enzyme |Schizosaccharomyces pombe|chr... 31 0.17 SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1... 30 0.30 SPBC216.07c |tor2|SPBC646.01c|phosphatidylinositol kinase Tor2|S... 29 0.69 SPAC20G8.05c |cdc15||cell division control protein Cdc15|Schizos... 27 1.6 SPAC6G10.10c |||human hmmtag2 homolog|Schizosaccharomyces pombe|... 27 2.1 SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M... 27 2.8 SPBC115.01c |rrp46||exosome subunit Rrp46 |Schizosaccharomyces p... 26 3.7 SPAC8C9.04 |||sequence orphan|Schizosaccharomyces pombe|chr 1|||... 26 4.9 SPAC3A12.17c |cys12|cys1b|cysteine synthase Cys12|Schizosaccharo... 25 8.5 SPBC23G7.08c |rga7||GTPase activating protein Rga7|Schizosacchar... 25 8.5 >SPBC32H8.12c |act1|cps8|actin |Schizosaccharomyces pombe|chr 2|||Manual Length = 375 Score = 279 bits (685), Expect = 2e-76 Identities = 125/137 (91%), Positives = 131/137 (95%) Frame = +1 Query: 85 DEEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEASSK 264 +EE+AALV+DNGSGMCKAGFAGDDAPRAVFPSIVGRPRH G+MVGMGQKDSYVGDEA SK Sbjct: 2 EEEIAALVIDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHHGIMVGMGQKDSYVGDEAQSK 61 Query: 265 RGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQ 444 RGILTLKYPIEHGIV NWDDMEKIWHHTFYNELRVAPEEHP LLTEAPLNPK+NREKMTQ Sbjct: 62 RGILTLKYPIEHGIVNNWDDMEKIWHHTFYNELRVAPEEHPCLLTEAPLNPKSNREKMTQ 121 Query: 445 IMFETFNTPAMYVAIQA 495 I+FETFN PA YVAIQA Sbjct: 122 IIFETFNAPAFYVAIQA 138 Score = 68.5 bits (160), Expect = 7e-13 Identities = 30/31 (96%), Positives = 31/31 (100%) Frame = +3 Query: 510 ASGRTTGIVLDSGDGVSHTVPIYEGYALPHA 602 ASGRTTGIVLDSGDGV+HTVPIYEGYALPHA Sbjct: 144 ASGRTTGIVLDSGDGVTHTVPIYEGYALPHA 174 >SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces pombe|chr 2|||Manual Length = 379 Score = 147 bits (356), Expect = 1e-36 Identities = 65/131 (49%), Positives = 91/131 (69%), Gaps = 1/131 (0%) Frame = +1 Query: 103 LVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEASSKRGILTL 282 + +DNGSG KAGFAGDD P+ +FP+ VGR +H+ VM QKD +VG EA + RG+L + Sbjct: 12 ICIDNGSGFIKAGFAGDDIPKCLFPTCVGRIKHERVMPSSIQKDMFVGSEAQNLRGLLKI 71 Query: 283 KYPIEHGIVTNWDDMEKIWHHTFYN-ELRVAPEEHPVLLTEAPLNPKANREKMTQIMFET 459 + PIE GI+ NW DME+IW + + + +L PEEHP+LLTE PL N+EK+ + +ET Sbjct: 72 QRPIERGIIQNWSDMEEIWSYIYSDQQLNTLPEEHPLLLTEPPLANIRNKEKIAEYFYET 131 Query: 460 FNTPAMYVAIQ 492 N PA+ ++Q Sbjct: 132 LNVPALSFSLQ 142 Score = 51.2 bits (117), Expect = 1e-07 Identities = 20/31 (64%), Positives = 28/31 (90%) Frame = +3 Query: 510 ASGRTTGIVLDSGDGVSHTVPIYEGYALPHA 602 AS RTTGIVL+ GDG++H+VPIY+G+++P A Sbjct: 149 ASARTTGIVLECGDGLTHSVPIYDGFSIPSA 179 >SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex subunit Arp2|Schizosaccharomyces pombe|chr 1|||Manual Length = 390 Score = 138 bits (335), Expect = 4e-34 Identities = 65/137 (47%), Positives = 94/137 (68%), Gaps = 2/137 (1%) Frame = +1 Query: 91 EVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRP--RHQGVMVGMGQKDSYVGDEASSK 264 E A +V+DNG+G K G+A D+ PR FPSIVGRP R + + KD VGDEA + Sbjct: 2 ESAPIVLDNGTGFVKVGYAKDNFPRFQFPSIVGRPILRAEEKTGNVQIKDVMVGDEAEAV 61 Query: 265 RGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQ 444 R +L +KYP+E+GI+ ++++M ++W +TF+ +L++ P +LLTE P+NP ANREKM + Sbjct: 62 RSLLQVKYPMENGIIRDFEEMNQLWDYTFFEKLKIDPRGRKILLTEPPMNPVANREKMCE 121 Query: 445 IMFETFNTPAMYVAIQA 495 MFE + +YVAIQA Sbjct: 122 TMFERYGFGGVYVAIQA 138 Score = 44.0 bits (99), Expect = 2e-05 Identities = 17/30 (56%), Positives = 23/30 (76%) Frame = +3 Query: 510 ASGRTTGIVLDSGDGVSHTVPIYEGYALPH 599 A G ++G+V+DSGDGV+H VP+YE L H Sbjct: 144 AQGLSSGVVVDSGDGVTHIVPVYESVVLNH 173 >SPAC630.03 |arp3|act2|actin-like protein Arp3|Schizosaccharomyces pombe|chr 1|||Manual Length = 427 Score = 113 bits (272), Expect = 2e-26 Identities = 62/155 (40%), Positives = 85/155 (54%), Gaps = 24/155 (15%) Frame = +1 Query: 103 LVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVG--MGQKDSYVGDEAS----SK 264 +++DNG+G K G+AG+DAP VFP+++ R G G + K SY+ + S SK Sbjct: 8 IIMDNGTGYSKLGYAGNDAPSYVFPTVIAT-RSAGASSGPAVSSKPSYMASKGSGHLSSK 66 Query: 265 RGI------------------LTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPV 390 R +L YPI HG + NWD ME+ W + + LR PE+H Sbjct: 67 RATEDLDFFIGNDALKKASAGYSLDYPIRHGQIENWDHMERFWQQSLFKYLRCEPEDHYF 126 Query: 391 LLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQA 495 LLTE PLNP NRE +IMFE+FN +Y+A+QA Sbjct: 127 LLTEPPLNPPENRENTAEIMFESFNCAGLYIAVQA 161 Score = 38.7 bits (86), Expect = 6e-04 Identities = 14/23 (60%), Positives = 19/23 (82%) Frame = +3 Query: 525 TGIVLDSGDGVSHTVPIYEGYAL 593 TG V+DSGDGV+H +P+ EGY + Sbjct: 180 TGTVVDSGDGVTHIIPVAEGYVI 202 >SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomyces pombe|chr 2|||Manual Length = 433 Score = 87.0 bits (206), Expect = 2e-18 Identities = 49/135 (36%), Positives = 72/135 (53%) Frame = +1 Query: 88 EEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEASSKR 267 +EV+A+V+D GS + GF+G+D P+ V PS G + G + Y+ S Sbjct: 9 DEVSAIVIDPGSKWTRIGFSGEDIPKCVLPSYCGEFSDGRRLFG----EEYI---YKSNP 61 Query: 268 GILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQI 447 G + +K I +G V NWD +W + +L+ P EHP+L+TE NP NR K + Sbjct: 62 G-MEIKNAIRNGWVENWDVTVDLWRYGLEQQLKTNPLEHPILITEPFDNPPENRVKTLET 120 Query: 448 MFETFNTPAMYVAIQ 492 MFE+ PA Y+A Q Sbjct: 121 MFESLRCPATYLAKQ 135 Score = 25.0 bits (52), Expect = 8.5 Identities = 12/30 (40%), Positives = 17/30 (56%) Frame = +3 Query: 504 AVASGRTTGIVLDSGDGVSHTVPIYEGYAL 593 A ASG+ T ++D G S IY+G+ L Sbjct: 140 AFASGKGTACLVDIGAERSSVSAIYDGFVL 169 >SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces pombe|chr 2|||Manual Length = 721 Score = 83.8 bits (198), Expect = 2e-17 Identities = 43/130 (33%), Positives = 76/130 (58%), Gaps = 1/130 (0%) Frame = +1 Query: 103 LVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEASSKRGILTL 282 LV+DNGS +AG+ G+ P+ VF ++V R R + + + + VG++ + G ++ Sbjct: 27 LVIDNGSWQLRAGWGGEKDPKLVFDNLVSRYRDRK----LSRTSTLVGNDTLIEVGSRSI 82 Query: 283 -KYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFET 459 + P E +++NWD ME++ +TF +L + EHP+ +TE NP R MT+++FE Sbjct: 83 ARSPFERNVISNWDLMEQVLDYTFL-KLGIDRMEHPICMTEPLANPTYVRSTMTELLFEL 141 Query: 460 FNTPAMYVAI 489 +N P++ I Sbjct: 142 YNAPSVAYGI 151 Score = 26.6 bits (56), Expect = 2.8 Identities = 9/21 (42%), Positives = 15/21 (71%) Frame = +3 Query: 522 TTGIVLDSGDGVSHTVPIYEG 584 ++GIVL+ G+ SH +P+ G Sbjct: 165 SSGIVLNLGNAASHVIPVLNG 185 >SPAC23D3.09 |arp42|arp4|SWI/SNF and RSC complex subunit Arp42|Schizosaccharomyces pombe|chr 1|||Manual Length = 430 Score = 76.6 bits (180), Expect = 3e-15 Identities = 41/138 (29%), Positives = 74/138 (53%), Gaps = 2/138 (1%) Frame = +1 Query: 88 EEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEASSKR 267 EE+ +LV+D GS + G+AG+++P + PS + GV + ++ YV DE Sbjct: 8 EEIPSLVIDPGSCWTRFGYAGEESPMTILPS------YYGVRSDVTGRNKYVVDELQIHA 61 Query: 268 GI--LTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMT 441 I + +K +GI+ +W+ W +L+V P E+ +++TE NP++ R+++ Sbjct: 62 PIPGMEVKNGKSNGIIQDWESTLYTWERGLKEKLQVNPTEYAMMITEPSWNPQSVRQQIM 121 Query: 442 QIMFETFNTPAMYVAIQA 495 + FE + PA Y+ QA Sbjct: 122 EAAFEQLHVPAFYLTKQA 139 >SPCC550.12 |arp6||actin-like protein Arp6|Schizosaccharomyces pombe|chr 3|||Manual Length = 401 Score = 35.1 bits (77), Expect = 0.008 Identities = 31/128 (24%), Positives = 56/128 (43%), Gaps = 4/128 (3%) Frame = +1 Query: 103 LVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEASSKRGILTL 282 +V+DNG+ KAGFAG P+ + R + G + ++G+E ++ TL Sbjct: 8 IVLDNGAYHIKAGFAGGKV--VEIPNCLTRSKD-------GNR-LFLGNELANCNDFTTL 57 Query: 283 KYPIEH--GIVTNWDDMEKIWHHTFYNELRVAPE--EHPVLLTEAPLNPKANREKMTQIM 450 ++ H G + +W +W N + P ++ +LLT+ + Q++ Sbjct: 58 QFRRAHEKGYLVHWSTETAVWDLVMRNVGVMEPSMADYSLLLTQPVFTMPSIEHNTIQLV 117 Query: 451 FETFNTPA 474 FE F A Sbjct: 118 FEEFQFDA 125 >SPAC1071.06 |arp9||SWI/SNF and RSC complex subunit Arp9|Schizosaccharomyces pombe|chr 1|||Manual Length = 523 Score = 34.7 bits (76), Expect = 0.011 Identities = 21/72 (29%), Positives = 32/72 (44%), Gaps = 4/72 (5%) Frame = +1 Query: 289 PIEHGIVTNWDDMEKIWHHTFYNELRVAPEE----HPVLLTEAPLNPKANREKMTQIMFE 456 PI+ G V +W+ ++ W H Y+ L P + +PV L +RE TQ FE Sbjct: 113 PIQRGRVVDWEALKAFWKH-LYSLLLKDPNDTTFRYPVCLVIPTYWSLYDRELATQFFFE 171 Query: 457 TFNTPAMYVAIQ 492 P +A + Sbjct: 172 ECQVPGFTIAYE 183 >SPAC26A3.05 |chc1||clathrin heavy chain Chc1 |Schizosaccharomyces pombe|chr 1|||Manual Length = 1666 Score = 31.9 bits (69), Expect = 0.074 Identities = 19/53 (35%), Positives = 31/53 (58%), Gaps = 5/53 (9%) Frame = +1 Query: 349 FYNELRVAPEEHPVLLTE--APLNPKANREKMTQIMFETFNTPAM---YVAIQ 492 +Y L E+HP+LLT+ A L P+ + ++ +I ++ NTP + VAIQ Sbjct: 1399 YYRALNFYLEQHPMLLTDLLAALTPRIDHPRVIRIFEKSENTPLILNFMVAIQ 1451 >SPAC56F8.02 |||AMP binding enzyme |Schizosaccharomyces pombe|chr 1|||Manual Length = 1517 Score = 30.7 bits (66), Expect = 0.17 Identities = 16/48 (33%), Positives = 26/48 (54%) Frame = +1 Query: 148 GDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEASSKRGILTLKYP 291 G+ PRA F ++ P H G+++ M KD G+E S +G + + P Sbjct: 502 GNQNPRATFVPLLCLPEHGGMVISM--KDWIGGEEFMSPKGFKSPRTP 547 >SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1|||Manual Length = 800 Score = 29.9 bits (64), Expect = 0.30 Identities = 19/55 (34%), Positives = 23/55 (41%), Gaps = 1/55 (1%) Frame = -3 Query: 245 PT*ESFCPI-PTITP*WRGLPTIEGNTARGASSPAKPALHIPEPLSTTNAATSSS 84 PT S P+ PT+ P P N S P PL+TTN TS+S Sbjct: 401 PTGNSTTPVTPTVPPTSSSTPLTTTNCTTSTSVPYTSTPVTSTPLATTNCTTSTS 455 >SPBC216.07c |tor2|SPBC646.01c|phosphatidylinositol kinase Tor2|Schizosaccharomyces pombe|chr 2|||Manual Length = 2337 Score = 28.7 bits (61), Expect = 0.69 Identities = 11/27 (40%), Positives = 18/27 (66%) Frame = -2 Query: 285 FEGQDTSFATGLISYIRVLLSHTDHHA 205 +EG+DT+ T +Y+R++L TD A Sbjct: 74 YEGEDTTRITRFANYLRIILPGTDQKA 100 >SPAC20G8.05c |cdc15||cell division control protein Cdc15|Schizosaccharomyces pombe|chr 1|||Manual Length = 927 Score = 27.5 bits (58), Expect = 1.6 Identities = 13/27 (48%), Positives = 15/27 (55%) Frame = -1 Query: 247 LLHKSPSVPYRPSRPDGGAFPRSRGTR 167 L+ K+PS PY SRP A S TR Sbjct: 309 LISKAPSYPYSSSRPSASASLASSPTR 335 >SPAC6G10.10c |||human hmmtag2 homolog|Schizosaccharomyces pombe|chr 1|||Manual Length = 194 Score = 27.1 bits (57), Expect = 2.1 Identities = 21/46 (45%), Positives = 24/46 (52%), Gaps = 4/46 (8%) Frame = +2 Query: 458 HST-RPPCTSPSKPCSRC---RVRSYHRYRAGLRRRCLPHRAHLRR 583 HST R TSP+ R R RS HR+ G RR P+R HL R Sbjct: 121 HSTSRSRSTSPANRHRRKEKERTRSNHRH--GSHRRHEPYRTHLSR 164 >SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||Manual Length = 309 Score = 26.6 bits (56), Expect = 2.8 Identities = 17/41 (41%), Positives = 21/41 (51%), Gaps = 2/41 (4%) Frame = -3 Query: 248 SPT*ESFC--PIPTITP*WRGLPTIEGNTARGASSPAKPAL 132 S T +SF P+PT P LPT NT + P+ PAL Sbjct: 64 SNTPKSFAAPPVPTGAP---SLPTSSNNTQQAEERPSMPAL 101 >SPBC115.01c |rrp46||exosome subunit Rrp46 |Schizosaccharomyces pombe|chr 2|||Manual Length = 226 Score = 26.2 bits (55), Expect = 3.7 Identities = 10/25 (40%), Positives = 18/25 (72%) Frame = +1 Query: 391 LLTEAPLNPKANREKMTQIMFETFN 465 +L APL+ + +KM +++FET+N Sbjct: 181 VLETAPLHAEEVSKKMKELLFETYN 205 >SPAC8C9.04 |||sequence orphan|Schizosaccharomyces pombe|chr 1|||Manual Length = 647 Score = 25.8 bits (54), Expect = 4.9 Identities = 13/47 (27%), Positives = 21/47 (44%) Frame = +3 Query: 408 PQPQGQQREDDPDHVRNIQHARHVRRHPSRALAVASGRTTGIVLDSG 548 P GQ+ ++ Q ++H RR +A A +S TT + G Sbjct: 488 PSSTGQEPTTPSTPAKSAQSSKHARRPSKQASAPSSPGTTSAAVPGG 534 >SPAC3A12.17c |cys12|cys1b|cysteine synthase Cys12|Schizosaccharomyces pombe|chr 1|||Manual Length = 395 Score = 25.0 bits (52), Expect = 8.5 Identities = 9/19 (47%), Positives = 13/19 (68%) Frame = -3 Query: 596 GKCVSFVDGHGVGDTVAGV 540 GK +F+ G G G T+AG+ Sbjct: 218 GKLDAFIAGSGTGGTIAGI 236 >SPBC23G7.08c |rga7||GTPase activating protein Rga7|Schizosaccharomyces pombe|chr 2|||Manual Length = 695 Score = 25.0 bits (52), Expect = 8.5 Identities = 20/64 (31%), Positives = 33/64 (51%), Gaps = 1/64 (1%) Frame = -3 Query: 272 IPLLLLASSPT*ESFCPIPTI-TP*WRGLPTIEGNTARGASSPAKPALHIPEPLSTTNAA 96 IP L ++P +F P P++ +P + T +TA ++SP L P + TN + Sbjct: 363 IPSPLQNTNPAPSTF-PNPSVASPAFPNSSTSNPSTAPASASPLASTLK-PSTANDTNGS 420 Query: 95 TSSS 84 +SSS Sbjct: 421 SSSS 424 Database: spombe Posted date: Oct 4, 2007 10:57 AM Number of letters in database: 2,362,478 Number of sequences in database: 5004 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 2,688,430 Number of Sequences: 5004 Number of extensions: 58496 Number of successful extensions: 184 Number of sequences better than 10.0: 20 Number of HSP's better than 10.0 without gapping: 156 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 176 length of database: 2,362,478 effective HSP length: 69 effective length of database: 2,017,202 effective search space used: 264253462 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
- SilkBase 1999-2023 -