Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--0648
(604 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC32H8.12c |act1|cps8|actin |Schizosaccharomyces pombe|chr 2||... 279 2e-76
SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces pomb... 147 1e-36
SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex s... 138 4e-34
SPAC630.03 |arp3|act2|actin-like protein Arp3|Schizosaccharomyce... 113 2e-26
SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomy... 87 2e-18
SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces pombe... 84 2e-17
SPAC23D3.09 |arp42|arp4|SWI/SNF and RSC complex subunit Arp42|Sc... 77 3e-15
SPCC550.12 |arp6||actin-like protein Arp6|Schizosaccharomyces po... 35 0.008
SPAC1071.06 |arp9||SWI/SNF and RSC complex subunit Arp9|Schizosa... 35 0.011
SPAC26A3.05 |chc1||clathrin heavy chain Chc1 |Schizosaccharomyce... 32 0.074
SPAC56F8.02 |||AMP binding enzyme |Schizosaccharomyces pombe|chr... 31 0.17
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1... 30 0.30
SPBC216.07c |tor2|SPBC646.01c|phosphatidylinositol kinase Tor2|S... 29 0.69
SPAC20G8.05c |cdc15||cell division control protein Cdc15|Schizos... 27 1.6
SPAC6G10.10c |||human hmmtag2 homolog|Schizosaccharomyces pombe|... 27 2.1
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M... 27 2.8
SPBC115.01c |rrp46||exosome subunit Rrp46 |Schizosaccharomyces p... 26 3.7
SPAC8C9.04 |||sequence orphan|Schizosaccharomyces pombe|chr 1|||... 26 4.9
SPAC3A12.17c |cys12|cys1b|cysteine synthase Cys12|Schizosaccharo... 25 8.5
SPBC23G7.08c |rga7||GTPase activating protein Rga7|Schizosacchar... 25 8.5
>SPBC32H8.12c |act1|cps8|actin |Schizosaccharomyces pombe|chr
2|||Manual
Length = 375
Score = 279 bits (685), Expect = 2e-76
Identities = 125/137 (91%), Positives = 131/137 (95%)
Frame = +1
Query: 85 DEEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEASSK 264
+EE+AALV+DNGSGMCKAGFAGDDAPRAVFPSIVGRPRH G+MVGMGQKDSYVGDEA SK
Sbjct: 2 EEEIAALVIDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHHGIMVGMGQKDSYVGDEAQSK 61
Query: 265 RGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQ 444
RGILTLKYPIEHGIV NWDDMEKIWHHTFYNELRVAPEEHP LLTEAPLNPK+NREKMTQ
Sbjct: 62 RGILTLKYPIEHGIVNNWDDMEKIWHHTFYNELRVAPEEHPCLLTEAPLNPKSNREKMTQ 121
Query: 445 IMFETFNTPAMYVAIQA 495
I+FETFN PA YVAIQA
Sbjct: 122 IIFETFNAPAFYVAIQA 138
Score = 68.5 bits (160), Expect = 7e-13
Identities = 30/31 (96%), Positives = 31/31 (100%)
Frame = +3
Query: 510 ASGRTTGIVLDSGDGVSHTVPIYEGYALPHA 602
ASGRTTGIVLDSGDGV+HTVPIYEGYALPHA
Sbjct: 144 ASGRTTGIVLDSGDGVTHTVPIYEGYALPHA 174
>SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 379
Score = 147 bits (356), Expect = 1e-36
Identities = 65/131 (49%), Positives = 91/131 (69%), Gaps = 1/131 (0%)
Frame = +1
Query: 103 LVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEASSKRGILTL 282
+ +DNGSG KAGFAGDD P+ +FP+ VGR +H+ VM QKD +VG EA + RG+L +
Sbjct: 12 ICIDNGSGFIKAGFAGDDIPKCLFPTCVGRIKHERVMPSSIQKDMFVGSEAQNLRGLLKI 71
Query: 283 KYPIEHGIVTNWDDMEKIWHHTFYN-ELRVAPEEHPVLLTEAPLNPKANREKMTQIMFET 459
+ PIE GI+ NW DME+IW + + + +L PEEHP+LLTE PL N+EK+ + +ET
Sbjct: 72 QRPIERGIIQNWSDMEEIWSYIYSDQQLNTLPEEHPLLLTEPPLANIRNKEKIAEYFYET 131
Query: 460 FNTPAMYVAIQ 492
N PA+ ++Q
Sbjct: 132 LNVPALSFSLQ 142
Score = 51.2 bits (117), Expect = 1e-07
Identities = 20/31 (64%), Positives = 28/31 (90%)
Frame = +3
Query: 510 ASGRTTGIVLDSGDGVSHTVPIYEGYALPHA 602
AS RTTGIVL+ GDG++H+VPIY+G+++P A
Sbjct: 149 ASARTTGIVLECGDGLTHSVPIYDGFSIPSA 179
>SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex
subunit Arp2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 390
Score = 138 bits (335), Expect = 4e-34
Identities = 65/137 (47%), Positives = 94/137 (68%), Gaps = 2/137 (1%)
Frame = +1
Query: 91 EVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRP--RHQGVMVGMGQKDSYVGDEASSK 264
E A +V+DNG+G K G+A D+ PR FPSIVGRP R + + KD VGDEA +
Sbjct: 2 ESAPIVLDNGTGFVKVGYAKDNFPRFQFPSIVGRPILRAEEKTGNVQIKDVMVGDEAEAV 61
Query: 265 RGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQ 444
R +L +KYP+E+GI+ ++++M ++W +TF+ +L++ P +LLTE P+NP ANREKM +
Sbjct: 62 RSLLQVKYPMENGIIRDFEEMNQLWDYTFFEKLKIDPRGRKILLTEPPMNPVANREKMCE 121
Query: 445 IMFETFNTPAMYVAIQA 495
MFE + +YVAIQA
Sbjct: 122 TMFERYGFGGVYVAIQA 138
Score = 44.0 bits (99), Expect = 2e-05
Identities = 17/30 (56%), Positives = 23/30 (76%)
Frame = +3
Query: 510 ASGRTTGIVLDSGDGVSHTVPIYEGYALPH 599
A G ++G+V+DSGDGV+H VP+YE L H
Sbjct: 144 AQGLSSGVVVDSGDGVTHIVPVYESVVLNH 173
>SPAC630.03 |arp3|act2|actin-like protein Arp3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 427
Score = 113 bits (272), Expect = 2e-26
Identities = 62/155 (40%), Positives = 85/155 (54%), Gaps = 24/155 (15%)
Frame = +1
Query: 103 LVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVG--MGQKDSYVGDEAS----SK 264
+++DNG+G K G+AG+DAP VFP+++ R G G + K SY+ + S SK
Sbjct: 8 IIMDNGTGYSKLGYAGNDAPSYVFPTVIAT-RSAGASSGPAVSSKPSYMASKGSGHLSSK 66
Query: 265 RGI------------------LTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPV 390
R +L YPI HG + NWD ME+ W + + LR PE+H
Sbjct: 67 RATEDLDFFIGNDALKKASAGYSLDYPIRHGQIENWDHMERFWQQSLFKYLRCEPEDHYF 126
Query: 391 LLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQA 495
LLTE PLNP NRE +IMFE+FN +Y+A+QA
Sbjct: 127 LLTEPPLNPPENRENTAEIMFESFNCAGLYIAVQA 161
Score = 38.7 bits (86), Expect = 6e-04
Identities = 14/23 (60%), Positives = 19/23 (82%)
Frame = +3
Query: 525 TGIVLDSGDGVSHTVPIYEGYAL 593
TG V+DSGDGV+H +P+ EGY +
Sbjct: 180 TGTVVDSGDGVTHIIPVAEGYVI 202
>SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 433
Score = 87.0 bits (206), Expect = 2e-18
Identities = 49/135 (36%), Positives = 72/135 (53%)
Frame = +1
Query: 88 EEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEASSKR 267
+EV+A+V+D GS + GF+G+D P+ V PS G + G + Y+ S
Sbjct: 9 DEVSAIVIDPGSKWTRIGFSGEDIPKCVLPSYCGEFSDGRRLFG----EEYI---YKSNP 61
Query: 268 GILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQI 447
G + +K I +G V NWD +W + +L+ P EHP+L+TE NP NR K +
Sbjct: 62 G-MEIKNAIRNGWVENWDVTVDLWRYGLEQQLKTNPLEHPILITEPFDNPPENRVKTLET 120
Query: 448 MFETFNTPAMYVAIQ 492
MFE+ PA Y+A Q
Sbjct: 121 MFESLRCPATYLAKQ 135
Score = 25.0 bits (52), Expect = 8.5
Identities = 12/30 (40%), Positives = 17/30 (56%)
Frame = +3
Query: 504 AVASGRTTGIVLDSGDGVSHTVPIYEGYAL 593
A ASG+ T ++D G S IY+G+ L
Sbjct: 140 AFASGKGTACLVDIGAERSSVSAIYDGFVL 169
>SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 721
Score = 83.8 bits (198), Expect = 2e-17
Identities = 43/130 (33%), Positives = 76/130 (58%), Gaps = 1/130 (0%)
Frame = +1
Query: 103 LVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEASSKRGILTL 282
LV+DNGS +AG+ G+ P+ VF ++V R R + + + + VG++ + G ++
Sbjct: 27 LVIDNGSWQLRAGWGGEKDPKLVFDNLVSRYRDRK----LSRTSTLVGNDTLIEVGSRSI 82
Query: 283 -KYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFET 459
+ P E +++NWD ME++ +TF +L + EHP+ +TE NP R MT+++FE
Sbjct: 83 ARSPFERNVISNWDLMEQVLDYTFL-KLGIDRMEHPICMTEPLANPTYVRSTMTELLFEL 141
Query: 460 FNTPAMYVAI 489
+N P++ I
Sbjct: 142 YNAPSVAYGI 151
Score = 26.6 bits (56), Expect = 2.8
Identities = 9/21 (42%), Positives = 15/21 (71%)
Frame = +3
Query: 522 TTGIVLDSGDGVSHTVPIYEG 584
++GIVL+ G+ SH +P+ G
Sbjct: 165 SSGIVLNLGNAASHVIPVLNG 185
>SPAC23D3.09 |arp42|arp4|SWI/SNF and RSC complex subunit
Arp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 430
Score = 76.6 bits (180), Expect = 3e-15
Identities = 41/138 (29%), Positives = 74/138 (53%), Gaps = 2/138 (1%)
Frame = +1
Query: 88 EEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEASSKR 267
EE+ +LV+D GS + G+AG+++P + PS + GV + ++ YV DE
Sbjct: 8 EEIPSLVIDPGSCWTRFGYAGEESPMTILPS------YYGVRSDVTGRNKYVVDELQIHA 61
Query: 268 GI--LTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMT 441
I + +K +GI+ +W+ W +L+V P E+ +++TE NP++ R+++
Sbjct: 62 PIPGMEVKNGKSNGIIQDWESTLYTWERGLKEKLQVNPTEYAMMITEPSWNPQSVRQQIM 121
Query: 442 QIMFETFNTPAMYVAIQA 495
+ FE + PA Y+ QA
Sbjct: 122 EAAFEQLHVPAFYLTKQA 139
>SPCC550.12 |arp6||actin-like protein Arp6|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 401
Score = 35.1 bits (77), Expect = 0.008
Identities = 31/128 (24%), Positives = 56/128 (43%), Gaps = 4/128 (3%)
Frame = +1
Query: 103 LVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEASSKRGILTL 282
+V+DNG+ KAGFAG P+ + R + G + ++G+E ++ TL
Sbjct: 8 IVLDNGAYHIKAGFAGGKV--VEIPNCLTRSKD-------GNR-LFLGNELANCNDFTTL 57
Query: 283 KYPIEH--GIVTNWDDMEKIWHHTFYNELRVAPE--EHPVLLTEAPLNPKANREKMTQIM 450
++ H G + +W +W N + P ++ +LLT+ + Q++
Sbjct: 58 QFRRAHEKGYLVHWSTETAVWDLVMRNVGVMEPSMADYSLLLTQPVFTMPSIEHNTIQLV 117
Query: 451 FETFNTPA 474
FE F A
Sbjct: 118 FEEFQFDA 125
>SPAC1071.06 |arp9||SWI/SNF and RSC complex subunit
Arp9|Schizosaccharomyces pombe|chr 1|||Manual
Length = 523
Score = 34.7 bits (76), Expect = 0.011
Identities = 21/72 (29%), Positives = 32/72 (44%), Gaps = 4/72 (5%)
Frame = +1
Query: 289 PIEHGIVTNWDDMEKIWHHTFYNELRVAPEE----HPVLLTEAPLNPKANREKMTQIMFE 456
PI+ G V +W+ ++ W H Y+ L P + +PV L +RE TQ FE
Sbjct: 113 PIQRGRVVDWEALKAFWKH-LYSLLLKDPNDTTFRYPVCLVIPTYWSLYDRELATQFFFE 171
Query: 457 TFNTPAMYVAIQ 492
P +A +
Sbjct: 172 ECQVPGFTIAYE 183
>SPAC26A3.05 |chc1||clathrin heavy chain Chc1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1666
Score = 31.9 bits (69), Expect = 0.074
Identities = 19/53 (35%), Positives = 31/53 (58%), Gaps = 5/53 (9%)
Frame = +1
Query: 349 FYNELRVAPEEHPVLLTE--APLNPKANREKMTQIMFETFNTPAM---YVAIQ 492
+Y L E+HP+LLT+ A L P+ + ++ +I ++ NTP + VAIQ
Sbjct: 1399 YYRALNFYLEQHPMLLTDLLAALTPRIDHPRVIRIFEKSENTPLILNFMVAIQ 1451
>SPAC56F8.02 |||AMP binding enzyme |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1517
Score = 30.7 bits (66), Expect = 0.17
Identities = 16/48 (33%), Positives = 26/48 (54%)
Frame = +1
Query: 148 GDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEASSKRGILTLKYP 291
G+ PRA F ++ P H G+++ M KD G+E S +G + + P
Sbjct: 502 GNQNPRATFVPLLCLPEHGGMVISM--KDWIGGEEFMSPKGFKSPRTP 547
>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 800
Score = 29.9 bits (64), Expect = 0.30
Identities = 19/55 (34%), Positives = 23/55 (41%), Gaps = 1/55 (1%)
Frame = -3
Query: 245 PT*ESFCPI-PTITP*WRGLPTIEGNTARGASSPAKPALHIPEPLSTTNAATSSS 84
PT S P+ PT+ P P N S P PL+TTN TS+S
Sbjct: 401 PTGNSTTPVTPTVPPTSSSTPLTTTNCTTSTSVPYTSTPVTSTPLATTNCTTSTS 455
>SPBC216.07c |tor2|SPBC646.01c|phosphatidylinositol kinase
Tor2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 2337
Score = 28.7 bits (61), Expect = 0.69
Identities = 11/27 (40%), Positives = 18/27 (66%)
Frame = -2
Query: 285 FEGQDTSFATGLISYIRVLLSHTDHHA 205
+EG+DT+ T +Y+R++L TD A
Sbjct: 74 YEGEDTTRITRFANYLRIILPGTDQKA 100
>SPAC20G8.05c |cdc15||cell division control protein
Cdc15|Schizosaccharomyces pombe|chr 1|||Manual
Length = 927
Score = 27.5 bits (58), Expect = 1.6
Identities = 13/27 (48%), Positives = 15/27 (55%)
Frame = -1
Query: 247 LLHKSPSVPYRPSRPDGGAFPRSRGTR 167
L+ K+PS PY SRP A S TR
Sbjct: 309 LISKAPSYPYSSSRPSASASLASSPTR 335
>SPAC6G10.10c |||human hmmtag2 homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 194
Score = 27.1 bits (57), Expect = 2.1
Identities = 21/46 (45%), Positives = 24/46 (52%), Gaps = 4/46 (8%)
Frame = +2
Query: 458 HST-RPPCTSPSKPCSRC---RVRSYHRYRAGLRRRCLPHRAHLRR 583
HST R TSP+ R R RS HR+ G RR P+R HL R
Sbjct: 121 HSTSRSRSTSPANRHRRKEKERTRSNHRH--GSHRRHEPYRTHLSR 164
>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 309
Score = 26.6 bits (56), Expect = 2.8
Identities = 17/41 (41%), Positives = 21/41 (51%), Gaps = 2/41 (4%)
Frame = -3
Query: 248 SPT*ESFC--PIPTITP*WRGLPTIEGNTARGASSPAKPAL 132
S T +SF P+PT P LPT NT + P+ PAL
Sbjct: 64 SNTPKSFAAPPVPTGAP---SLPTSSNNTQQAEERPSMPAL 101
>SPBC115.01c |rrp46||exosome subunit Rrp46 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 226
Score = 26.2 bits (55), Expect = 3.7
Identities = 10/25 (40%), Positives = 18/25 (72%)
Frame = +1
Query: 391 LLTEAPLNPKANREKMTQIMFETFN 465
+L APL+ + +KM +++FET+N
Sbjct: 181 VLETAPLHAEEVSKKMKELLFETYN 205
>SPAC8C9.04 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 647
Score = 25.8 bits (54), Expect = 4.9
Identities = 13/47 (27%), Positives = 21/47 (44%)
Frame = +3
Query: 408 PQPQGQQREDDPDHVRNIQHARHVRRHPSRALAVASGRTTGIVLDSG 548
P GQ+ ++ Q ++H RR +A A +S TT + G
Sbjct: 488 PSSTGQEPTTPSTPAKSAQSSKHARRPSKQASAPSSPGTTSAAVPGG 534
>SPAC3A12.17c |cys12|cys1b|cysteine synthase
Cys12|Schizosaccharomyces pombe|chr 1|||Manual
Length = 395
Score = 25.0 bits (52), Expect = 8.5
Identities = 9/19 (47%), Positives = 13/19 (68%)
Frame = -3
Query: 596 GKCVSFVDGHGVGDTVAGV 540
GK +F+ G G G T+AG+
Sbjct: 218 GKLDAFIAGSGTGGTIAGI 236
>SPBC23G7.08c |rga7||GTPase activating protein
Rga7|Schizosaccharomyces pombe|chr 2|||Manual
Length = 695
Score = 25.0 bits (52), Expect = 8.5
Identities = 20/64 (31%), Positives = 33/64 (51%), Gaps = 1/64 (1%)
Frame = -3
Query: 272 IPLLLLASSPT*ESFCPIPTI-TP*WRGLPTIEGNTARGASSPAKPALHIPEPLSTTNAA 96
IP L ++P +F P P++ +P + T +TA ++SP L P + TN +
Sbjct: 363 IPSPLQNTNPAPSTF-PNPSVASPAFPNSSTSNPSTAPASASPLASTLK-PSTANDTNGS 420
Query: 95 TSSS 84
+SSS
Sbjct: 421 SSSS 424
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,688,430
Number of Sequences: 5004
Number of extensions: 58496
Number of successful extensions: 184
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 156
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 176
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 264253462
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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