Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--0646
(670 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_50386| Best HMM Match : GTP_EFTU (HMM E-Value=1.6e-09) 109 3e-24
SB_8918| Best HMM Match : GTP_EFTU (HMM E-Value=1.09301e-43) 100 9e-22
SB_18076| Best HMM Match : GTP_EFTU (HMM E-Value=0.018) 97 1e-20
SB_51711| Best HMM Match : GTP_EFTU_D3 (HMM E-Value=0) 71 6e-13
SB_6916| Best HMM Match : No HMM Matches (HMM E-Value=.) 36 0.023
SB_50050| Best HMM Match : No HMM Matches (HMM E-Value=.) 34 0.091
SB_43410| Best HMM Match : GTP_EFTU (HMM E-Value=3.9e-26) 33 0.16
SB_44740| Best HMM Match : GTP_EFTU (HMM E-Value=0) 32 0.37
SB_14043| Best HMM Match : Extensin_1 (HMM E-Value=0.75) 32 0.49
SB_19088| Best HMM Match : PSGP (HMM E-Value=2.5) 31 0.85
SB_18949| Best HMM Match : GTP_EFTU (HMM E-Value=1.7e-10) 30 2.0
SB_7329| Best HMM Match : GTP_EFTU (HMM E-Value=0) 30 2.0
SB_56013| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.6
SB_41020| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.6
SB_29733| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.6
SB_3698| Best HMM Match : GTP_EFTU (HMM E-Value=9.3e-34) 29 3.4
SB_3191| Best HMM Match : ig (HMM E-Value=3.5e-16) 29 3.4
SB_9092| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.5
SB_34007| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.5
SB_32081| Best HMM Match : zf-MYM (HMM E-Value=4.8) 28 7.9
SB_10056| Best HMM Match : RNA_pol_Rpb1_R (HMM E-Value=7.7e-05) 28 7.9
SB_2439| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.9
SB_34931| Best HMM Match : C4dic_mal_tran (HMM E-Value=0.46) 28 7.9
SB_25339| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.9
SB_8259| Best HMM Match : CAT (HMM E-Value=6.1e-10) 28 7.9
>SB_50386| Best HMM Match : GTP_EFTU (HMM E-Value=1.6e-09)
Length = 123
Score = 109 bits (261), Expect = 3e-24
Identities = 49/80 (61%), Positives = 62/80 (77%)
Frame = +2
Query: 257 LWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREH 436
L +F+T +T++DAPGH+DFI NMITG +QAD A+L+V A TGEFEAG GQTREH
Sbjct: 5 LTRFQTKNKVITLMDAPGHKDFIPNMITGAAQADVAILVVDAITGEFEAGFESGGQTREH 64
Query: 437 ALLAFTLGVKQLIVGVNKMD 496
A+L +LGV QLIV +NK+D
Sbjct: 65 AILVRSLGVTQLIVAINKLD 84
>SB_8918| Best HMM Match : GTP_EFTU (HMM E-Value=1.09301e-43)
Length = 547
Score = 100 bits (240), Expect = 9e-22
Identities = 43/77 (55%), Positives = 58/77 (75%)
Frame = +2
Query: 266 FETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALL 445
F+T + T++DAPGH+ F+ NMI+G +QAD VL+++A GEFE G + GQTREHA+L
Sbjct: 217 FDTDTKHFTLLDAPGHKSFVPNMISGATQADLGVLVISARKGEFETGFERGGQTREHAML 276
Query: 446 AFTLGVKQLIVGVNKMD 496
A T GVK L++ VNKMD
Sbjct: 277 AKTAGVKHLVILVNKMD 293
Score = 50.4 bits (115), Expect = 1e-06
Identities = 19/47 (40%), Positives = 34/47 (72%)
Frame = +3
Query: 114 YKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERERGITIDI 254
Y G +DKRT+EK+E+EA+E + ++ +W LD + ER++G T+++
Sbjct: 166 YLTGQVDKRTLEKYEREAKEKNRETWYLSWALDTNQEERDKGNTVEV 212
Score = 33.9 bits (74), Expect = 0.12
Identities = 11/24 (45%), Positives = 21/24 (87%)
Frame = +1
Query: 511 YSEPRFEEIKKEVSSYIKKIGYNP 582
++E R+EEIK +++ ++KK+G+NP
Sbjct: 299 WNEERYEEIKVKLTPFLKKVGFNP 322
>SB_18076| Best HMM Match : GTP_EFTU (HMM E-Value=0.018)
Length = 106
Score = 97.1 bits (231), Expect = 1e-20
Identities = 44/49 (89%), Positives = 46/49 (93%)
Frame = +3
Query: 30 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEM 176
M KEK HINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKE+ E+
Sbjct: 1 MPKEKIHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKESSEV 49
>SB_51711| Best HMM Match : GTP_EFTU_D3 (HMM E-Value=0)
Length = 322
Score = 71.3 bits (167), Expect = 6e-13
Identities = 30/33 (90%), Positives = 32/33 (96%)
Frame = +2
Query: 254 SLWKFETSKYYVTIIDAPGHRDFIKNMITGTSQ 352
+LWKFET KYYVT+IDAPGHRDFIKNMITGTSQ
Sbjct: 28 ALWKFETLKYYVTVIDAPGHRDFIKNMITGTSQ 60
Score = 60.5 bits (140), Expect = 1e-09
Identities = 27/27 (100%), Positives = 27/27 (100%)
Frame = +3
Query: 174 MGKGSFKYAWVLDKLKAERERGITIDI 254
MGKGSFKYAWVLDKLKAERERGITIDI
Sbjct: 1 MGKGSFKYAWVLDKLKAERERGITIDI 27
>SB_6916| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2670
Score = 36.3 bits (80), Expect = 0.023
Identities = 25/65 (38%), Positives = 31/65 (47%)
Frame = +3
Query: 54 NIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERE 233
N ++ HVD GKST L+ G I K + K VLDKL+ ERE
Sbjct: 1943 NFSIVAHVDHGKSTLADRLLEVTGTISKSSDNK----------------QVLDKLQVERE 1986
Query: 234 RGITI 248
RGIT+
Sbjct: 1987 RGITV 1991
>SB_50050| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 545
Score = 34.3 bits (75), Expect = 0.091
Identities = 24/70 (34%), Positives = 34/70 (48%)
Frame = +2
Query: 287 VTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVK 466
+T ID PGH F G + D VL+VAA G ++ ++ HA+ A
Sbjct: 78 ITFIDTPGHAAFNSMRARGANVTDIVVLVVAADDGV----KTQTVESIRHAMHAKV---- 129
Query: 467 QLIVGVNKMD 496
LIV +NK+D
Sbjct: 130 PLIVAINKID 139
>SB_43410| Best HMM Match : GTP_EFTU (HMM E-Value=3.9e-26)
Length = 541
Score = 33.5 bits (73), Expect = 0.16
Identities = 18/67 (26%), Positives = 31/67 (46%)
Frame = +2
Query: 296 IDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVKQLI 475
+D PGH + M+ G + D A+L++A QT EH + +K ++
Sbjct: 69 VDCPGHDILMATMLNGAAVMDAALLLIAGNES------CPQPQTSEHLAAIEIMKLKHIL 122
Query: 476 VGVNKMD 496
+ NK+D
Sbjct: 123 ILQNKID 129
>SB_44740| Best HMM Match : GTP_EFTU (HMM E-Value=0)
Length = 833
Score = 32.3 bits (70), Expect = 0.37
Identities = 16/32 (50%), Positives = 19/32 (59%)
Frame = +3
Query: 30 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCG 125
M K+ N+ VI HVD GKST T L+ K G
Sbjct: 12 MDKKLNIRNMSVIAHVDHGKSTLTDSLVSKAG 43
Score = 28.3 bits (60), Expect = 6.0
Identities = 11/37 (29%), Positives = 20/37 (54%)
Frame = +2
Query: 281 YYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTG 391
+ + +ID+PGH DF + D A+++V +G
Sbjct: 99 FLINLIDSPGHVDFSSEVTAALRVTDGALVVVDCVSG 135
>SB_14043| Best HMM Match : Extensin_1 (HMM E-Value=0.75)
Length = 568
Score = 31.9 bits (69), Expect = 0.49
Identities = 14/52 (26%), Positives = 24/52 (46%)
Frame = +2
Query: 410 SKNGQTREHALLAFTLGVKQLIVGVNKMDSTEPHTVSPDLRKSRRKYPHTSR 565
+K T+ H + +T + K +T+PHT+ P K PHT++
Sbjct: 19 TKTHTTKPHNIKLYTTKPRTTKPHTTKPHTTKPHTIKPHTTKPHTTKPHTTK 70
Score = 27.9 bits (59), Expect = 7.9
Identities = 14/52 (26%), Positives = 22/52 (42%)
Frame = +2
Query: 410 SKNGQTREHALLAFTLGVKQLIVGVNKMDSTEPHTVSPDLRKSRRKYPHTSR 565
+K T+ H T+ K +T+PHT P K + PHT++
Sbjct: 39 TKPHTTKPHTTKPHTIKPHTTKPHTTKPHTTKPHTTKPRTTKPQTTKPHTTK 90
>SB_19088| Best HMM Match : PSGP (HMM E-Value=2.5)
Length = 737
Score = 31.1 bits (67), Expect = 0.85
Identities = 17/57 (29%), Positives = 25/57 (43%)
Frame = -3
Query: 269 RTSRENIDCDTTLTLSL*FVQYPSIFEGSFTHFXXXXXXXLDGTFVNTTTFVDQMTS 99
RT+ D TT+T S YPS+ + +F D T N TT V +++
Sbjct: 337 RTTSTTADFPTTITPSPNITSYPSLMTSAVGNFTSAKSVVFDSTTPNATTLVPSISA 393
Score = 28.3 bits (60), Expect = 6.0
Identities = 16/57 (28%), Positives = 25/57 (43%)
Frame = -3
Query: 269 RTSRENIDCDTTLTLSL*FVQYPSIFEGSFTHFXXXXXXXLDGTFVNTTTFVDQMTS 99
RT+ + TT+T S YPS+ + +F D T N TT V +++
Sbjct: 538 RTTSTSAVFPTTITPSPNITSYPSLMTSAVGNFTSATSVVFDSTTPNATTLVQSISA 594
>SB_18949| Best HMM Match : GTP_EFTU (HMM E-Value=1.7e-10)
Length = 783
Score = 29.9 bits (64), Expect = 2.0
Identities = 13/28 (46%), Positives = 16/28 (57%)
Frame = +2
Query: 293 IIDAPGHRDFIKNMITGTSQADCAVLIV 376
IID PGH F G+S D A+L+V
Sbjct: 682 IIDTPGHESFSNLRSRGSSLCDMAILVV 709
>SB_7329| Best HMM Match : GTP_EFTU (HMM E-Value=0)
Length = 359
Score = 29.9 bits (64), Expect = 2.0
Identities = 9/35 (25%), Positives = 19/35 (54%)
Frame = +2
Query: 287 VTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTG 391
+ I+D PGH+DF ++ + D ++++ G
Sbjct: 81 INILDTPGHKDFAEDTFRTLTAVDSVIVVIDVAKG 115
Score = 28.3 bits (60), Expect = 6.0
Identities = 19/62 (30%), Positives = 30/62 (48%)
Frame = +3
Query: 63 VIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERERGI 242
+I H D+GK+T T L+ G I +EA + K D ++ ER+RGI
Sbjct: 15 IISHPDAGKTTLTEKLLLFGGAI---------QEAGAVKSNKIKKGATSDFMEIERQRGI 65
Query: 243 TI 248
++
Sbjct: 66 SV 67
>SB_56013| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 539
Score = 29.5 bits (63), Expect = 2.6
Identities = 13/24 (54%), Positives = 17/24 (70%)
Frame = +3
Query: 45 THINIVVIGHVDSGKSTTTGHLIY 116
T I + V+G+V+SGKST G L Y
Sbjct: 111 TDIRMAVLGNVESGKSTLLGVLTY 134
>SB_41020| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1229
Score = 29.5 bits (63), Expect = 2.6
Identities = 17/57 (29%), Positives = 25/57 (43%)
Frame = -3
Query: 269 RTSRENIDCDTTLTLSL*FVQYPSIFEGSFTHFXXXXXXXLDGTFVNTTTFVDQMTS 99
RT+ + TT+T S YPS+ + +F D T N TT V +T+
Sbjct: 226 RTTSTSAVFPTTITPSPNITSYPSLMTSAVGNFTSATSVVFDSTTPNATTLVPSITA 282
Score = 27.9 bits (59), Expect = 7.9
Identities = 16/57 (28%), Positives = 25/57 (43%)
Frame = -3
Query: 269 RTSRENIDCDTTLTLSL*FVQYPSIFEGSFTHFXXXXXXXLDGTFVNTTTFVDQMTS 99
RT+ + TT+T S YPS+ + +F D T N TT V +++
Sbjct: 427 RTTSTSAVFPTTITPSPNITSYPSLMTSAVGNFTSATSVVFDSTTPNATTLVPSISA 483
>SB_29733| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 360
Score = 29.5 bits (63), Expect = 2.6
Identities = 21/62 (33%), Positives = 33/62 (53%), Gaps = 2/62 (3%)
Frame = +2
Query: 461 VKQLIVGVNKMDSTEPHTVSPDLRKSRRKY--PHTSRRLATTQLLSLSCPFLDGTGDNML 634
V Q+ G+N + S T+SP+ R RK P+ R++ T+L ++ P+L G L
Sbjct: 229 VHQMSRGLNAIHSKYMATLSPECRDVLRKLLEPNPQLRISLTEL--MAHPWLTSKGTWPL 286
Query: 635 EP 640
EP
Sbjct: 287 EP 288
>SB_3698| Best HMM Match : GTP_EFTU (HMM E-Value=9.3e-34)
Length = 240
Score = 29.1 bits (62), Expect = 3.4
Identities = 20/70 (28%), Positives = 29/70 (41%)
Frame = +2
Query: 287 VTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVK 466
+ +D PGH F G D +++VAA QT+E A GV
Sbjct: 140 IAFLDTPGHEAFTAMRARGAQVTDLVIIVVAADDDVMP-------QTKEAISHAQAAGV- 191
Query: 467 QLIVGVNKMD 496
+I +NK+D
Sbjct: 192 PIIFAINKID 201
>SB_3191| Best HMM Match : ig (HMM E-Value=3.5e-16)
Length = 326
Score = 29.1 bits (62), Expect = 3.4
Identities = 19/59 (32%), Positives = 28/59 (47%)
Frame = -1
Query: 301 INDGNIVLASFELPERISIVIPRSRSAFSLSNTQAYLKDPLPISWASFSNFSMVRLSIP 125
+ND VL F L RIS + P+ + TQA L P I +FS +++ +P
Sbjct: 133 VNDRYTVLEDFSL--RISGMTPKDEGNYIFEVTQAALFRPFTIKAIAFSPPEIIQQPVP 189
>SB_9092| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 662
Score = 28.7 bits (61), Expect = 4.5
Identities = 19/59 (32%), Positives = 28/59 (47%)
Frame = -1
Query: 301 INDGNIVLASFELPERISIVIPRSRSAFSLSNTQAYLKDPLPISWASFSNFSMVRLSIP 125
+ND VL F L RIS + P+ + TQA L P I +FS +++ +P
Sbjct: 153 VNDRYSVLEDFSL--RISGMTPKDEGNYIFEVTQAALFRPFTIKAIAFSPPEIIQQPVP 209
>SB_34007| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1411
Score = 28.7 bits (61), Expect = 4.5
Identities = 15/42 (35%), Positives = 19/42 (45%)
Frame = +1
Query: 511 YSEPRFEEIKKEVSSYIKKIGYNPTAVAFVPISGWHRRQHVG 636
Y E R + +E+ K+ Y PT A P S RR VG
Sbjct: 633 YQEKRINQYAEEIEKLEDKLMYLPTTPAVSPTSKDRRRSTVG 674
>SB_32081| Best HMM Match : zf-MYM (HMM E-Value=4.8)
Length = 146
Score = 27.9 bits (59), Expect = 7.9
Identities = 10/18 (55%), Positives = 11/18 (61%)
Frame = -3
Query: 647 WLKAPTCCLRCHPEMGTK 594
WLK P C L C E GT+
Sbjct: 42 WLKQPFCSLNCKSESGTE 59
>SB_10056| Best HMM Match : RNA_pol_Rpb1_R (HMM E-Value=7.7e-05)
Length = 1960
Score = 27.9 bits (59), Expect = 7.9
Identities = 16/57 (28%), Positives = 25/57 (43%)
Frame = -3
Query: 269 RTSRENIDCDTTLTLSL*FVQYPSIFEGSFTHFXXXXXXXLDGTFVNTTTFVDQMTS 99
RT+ + TT+T S YPS+ + +F D T N TT V +++
Sbjct: 226 RTTSTSAVFPTTITPSPNITSYPSLMTSAVGNFTSAKSVVFDSTTPNATTLVPSISA 282
Score = 27.9 bits (59), Expect = 7.9
Identities = 15/57 (26%), Positives = 26/57 (45%)
Frame = -3
Query: 269 RTSRENIDCDTTLTLSL*FVQYPSIFEGSFTHFXXXXXXXLDGTFVNTTTFVDQMTS 99
RT+ ++ TT+T S YPS+ + + +F D T N T V +++
Sbjct: 1030 RTASTSVVFPTTITPSPNITSYPSLMKSAVGNFTSATSVVFDSTTPNATRLVPSISA 1086
>SB_2439| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 951
Score = 27.9 bits (59), Expect = 7.9
Identities = 13/43 (30%), Positives = 23/43 (53%)
Frame = +1
Query: 451 HPRCQTAHRRSKQNGFH*TTYSEPRFEEIKKEVSSYIKKIGYN 579
H + + RR ++N + P+FE++K + +S KKI N
Sbjct: 109 HETTEPSVRRCQRNSVRDIDAAWPKFEKLKSQFNSNSKKISMN 151
>SB_34931| Best HMM Match : C4dic_mal_tran (HMM E-Value=0.46)
Length = 572
Score = 27.9 bits (59), Expect = 7.9
Identities = 16/57 (28%), Positives = 25/57 (43%)
Frame = -3
Query: 269 RTSRENIDCDTTLTLSL*FVQYPSIFEGSFTHFXXXXXXXLDGTFVNTTTFVDQMTS 99
RT+ + TT+T S YPS+ + +F D T N TT V +++
Sbjct: 8 RTTSTSAVFPTTITPSPNITSYPSLMTSAVGNFTSATSVVFDSTTPNATTLVPSISA 64
Score = 27.9 bits (59), Expect = 7.9
Identities = 16/57 (28%), Positives = 25/57 (43%)
Frame = -3
Query: 269 RTSRENIDCDTTLTLSL*FVQYPSIFEGSFTHFXXXXXXXLDGTFVNTTTFVDQMTS 99
RT+ + TT+T S YPS+ + +F D T N TT V +++
Sbjct: 410 RTTSTSAVFPTTITPSPNITSYPSLMTSAVGNFTSATSVVFDSTTPNATTLVPSISA 466
>SB_25339| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1049
Score = 27.9 bits (59), Expect = 7.9
Identities = 14/61 (22%), Positives = 29/61 (47%)
Frame = +2
Query: 338 TGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVKQLIVGVNKMDSTEPHTV 517
TGT+ D + + G+F++ ++ N + LLA +G+ + G+ + HT
Sbjct: 790 TGTNVLDSIISLTPGKIGQFDSSVTMNEDSTSE-LLASIMGLTKTTSGLLVSQTVSTHTT 848
Query: 518 S 520
+
Sbjct: 849 A 849
>SB_8259| Best HMM Match : CAT (HMM E-Value=6.1e-10)
Length = 80
Score = 27.9 bits (59), Expect = 7.9
Identities = 11/24 (45%), Positives = 14/24 (58%)
Frame = +1
Query: 583 TAVAFVPISGWHRRQHVGAFNQNA 654
T V IS WHR++H AF+ A
Sbjct: 6 TGYTTVDISQWHRKEHFEAFHSGA 29
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,519,651
Number of Sequences: 59808
Number of extensions: 454571
Number of successful extensions: 1406
Number of sequences better than 10.0: 25
Number of HSP's better than 10.0 without gapping: 1231
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1396
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1729817375
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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