Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0645
         (598 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC14F5.04c |pgk1||phosphoglycerate kinase|Schizosaccharomyces ...    26   4.8  
SPAC644.17c |mrpl9||mitochondrial ribosomal protein subunit L9|S...    25   8.4  
SPBC1734.12c |alg12||dolichyl pyrophosphate Man7GlcNAc2 alpha-1,...    25   8.4  
SPBC12C2.13c |fnx1|SPBC21D10.04c|MFS multidrug efflux transporte...    25   8.4  

>SPBC14F5.04c |pgk1||phosphoglycerate kinase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 414

 Score = 25.8 bits (54), Expect = 4.8
 Identities = 9/20 (45%), Positives = 13/20 (65%)
 Frame = -2

Query: 60  SVLDELLKTCRTGNIELASG 1
           S+LD  +KTC  GN+ +  G
Sbjct: 351 SMLDACVKTCEAGNVVIVGG 370


>SPAC644.17c |mrpl9||mitochondrial ribosomal protein subunit
           L9|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 259

 Score = 25.0 bits (52), Expect = 8.4
 Identities = 9/14 (64%), Positives = 12/14 (85%)
 Frame = +2

Query: 386 GTNKIAVYITDTVS 427
           G NK AVY+TDT++
Sbjct: 239 GPNKSAVYVTDTIN 252


>SPBC1734.12c |alg12||dolichyl pyrophosphate Man7GlcNAc2
           alpha-1,3-glucosyltransferase Alg12 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 546

 Score = 25.0 bits (52), Expect = 8.4
 Identities = 22/65 (33%), Positives = 28/65 (43%), Gaps = 6/65 (9%)
 Frame = -1

Query: 508 SCLLNEMFWNTLCWLELNLHTDF**NVRDGVCN------IYSDFVRTPSIDVIPVQR*LL 347
           S L++  FW   CW EL     F  NV +G  +       Y  FVR P + + P     L
Sbjct: 215 SFLIDSYFWGAWCWPELEA---FLFNVVEGKSSDWGTSPFYYYFVRLPWLFLNPTTLLFL 271

Query: 346 TISRV 332
            IS V
Sbjct: 272 LISFV 276


>SPBC12C2.13c |fnx1|SPBC21D10.04c|MFS multidrug efflux
           transporter|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 531

 Score = 25.0 bits (52), Expect = 8.4
 Identities = 17/50 (34%), Positives = 24/50 (48%), Gaps = 3/50 (6%)
 Frame = -2

Query: 447 PTFSETLETVSVIYTAILFVPLALTSS---LCSGSYLR*AGSYTYANLVI 307
           P F ET   +      +   P  +++S   LCSG Y++  G   Y NLVI
Sbjct: 315 PLFFETTLLMPSSEAGVRIFPYVISTSVGSLCSGLYMKKTG--RYRNLVI 362


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,386,305
Number of Sequences: 5004
Number of extensions: 47365
Number of successful extensions: 66
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 64
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 66
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 260219058
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)