Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0645
         (598 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_15228| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.0  
SB_48609| Best HMM Match : FATC (HMM E-Value=6.9)                      28   6.6  

>SB_15228| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 110

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 11/15 (73%), Positives = 13/15 (86%)
 Frame = +3

Query: 294 RYFFQLLNLHKYKTR 338
           RYFF+LLNLHK + R
Sbjct: 7   RYFFKLLNLHKKRLR 21


>SB_48609| Best HMM Match : FATC (HMM E-Value=6.9)
          Length = 137

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 15/43 (34%), Positives = 23/43 (53%)
 Frame = +3

Query: 300 FFQLLNLHKYKTRLIVSSYRCTGMTSMLGVRTKSLYILQTPSL 428
           F++L+NL K K    +  Y       +LGV TK L I +T ++
Sbjct: 5   FYKLINLLKKKRSRNLHHYHFLADCQLLGVVTKGLIIKKTANI 47


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,177,353
Number of Sequences: 59808
Number of extensions: 331665
Number of successful extensions: 464
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 406
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 464
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1439498375
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)