Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0645
         (598 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholi...    22   4.0  
DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholi...    22   4.0  
AY647436-1|AAU81605.1|  567|Apis mellifera juvenile hormone este...    21   9.2  
AB083009-1|BAC54130.1|  567|Apis mellifera esterase protein.           21   9.2  

>DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 22.2 bits (45), Expect = 4.0
 Identities = 16/51 (31%), Positives = 21/51 (41%)
 Frame = +1

Query: 433 FTKSRCVDLIPTSKACSRTFHLVNNWDSDVCKLGEPRLRVLLVMSILNVWI 585
           F+ SRC   I  S  C R          D  K+ E    V +V+  L +WI
Sbjct: 475 FSHSRCPPEIHKSCICVRFIAEHTKMLEDSTKVKEDWKYVAMVLDRLFLWI 525


>DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 22.2 bits (45), Expect = 4.0
 Identities = 16/51 (31%), Positives = 21/51 (41%)
 Frame = +1

Query: 433 FTKSRCVDLIPTSKACSRTFHLVNNWDSDVCKLGEPRLRVLLVMSILNVWI 585
           F+ SRC   I  S  C R          D  K+ E    V +V+  L +WI
Sbjct: 475 FSHSRCPPEIHKSCICVRFIAEHTKMLEDSTKVKEDWKYVAMVLDRLFLWI 525


>AY647436-1|AAU81605.1|  567|Apis mellifera juvenile hormone
           esterase protein.
          Length = 567

 Score = 21.0 bits (42), Expect = 9.2
 Identities = 8/16 (50%), Positives = 11/16 (68%)
 Frame = -1

Query: 493 EMFWNTLCWLELNLHT 446
           E FWN++ + E  LHT
Sbjct: 544 EDFWNSINFNENKLHT 559


>AB083009-1|BAC54130.1|  567|Apis mellifera esterase protein.
          Length = 567

 Score = 21.0 bits (42), Expect = 9.2
 Identities = 8/16 (50%), Positives = 11/16 (68%)
 Frame = -1

Query: 493 EMFWNTLCWLELNLHT 446
           E FWN++ + E  LHT
Sbjct: 544 EDFWNSINFNENKLHT 559


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 153,679
Number of Sequences: 438
Number of extensions: 3279
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 17482179
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)