Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0645
         (598 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g38430.1 68415.m04720 expressed protein                             31   0.58 
At4g11750.1 68417.m01874 kelch repeat-containing F-box family pr...    28   5.4  

>At2g38430.1 68415.m04720 expressed protein
          Length = 393

 Score = 31.1 bits (67), Expect = 0.58
 Identities = 13/38 (34%), Positives = 22/38 (57%)
 Frame = +2

Query: 335 PAYRK*LPLHRDDVNARGTNKIAVYITDTVSNVSLKVG 448
           P+Y K +PL  D V  R   K ++ + + V NV++ +G
Sbjct: 69  PSYVKFVPLSSDSVECRKGEKPSILMNNNVQNVNMNIG 106


>At4g11750.1 68417.m01874 kelch repeat-containing F-box family
           protein contains F-box domain Pfam:PF00646 and Kelch
           motif Pfam:PF01344
          Length = 386

 Score = 27.9 bits (59), Expect = 5.4
 Identities = 15/47 (31%), Positives = 27/47 (57%)
 Frame = +3

Query: 270 LN*SS*VTRYFFQLLNLHKYKTRLIVSSYRCTGMTSMLGVRTKSLYI 410
           LN  + V+R ++ +L+L   + R +V+S     +  +LG R K LY+
Sbjct: 17  LNCLARVSRLYYPILSLVSKRFRSLVASLELYEIRKLLGHREKCLYL 63


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,952,873
Number of Sequences: 28952
Number of extensions: 229841
Number of successful extensions: 380
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 377
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 380
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1190791976
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)