Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--0644
(563 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC32H8.12c |act1|cps8|actin |Schizosaccharomyces pombe|chr 2||... 193 2e-50
SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces pomb... 105 6e-24
SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex s... 101 6e-23
SPAC630.03 |arp3|act2|actin-like protein Arp3|Schizosaccharomyce... 88 7e-19
SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces pombe... 59 4e-10
SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomy... 58 1e-09
SPAC23D3.09 |arp42|arp4|SWI/SNF and RSC complex subunit Arp42|Sc... 46 4e-06
SPAC1071.06 |arp9||SWI/SNF and RSC complex subunit Arp9|Schizosa... 39 6e-04
SPAC26A3.05 |chc1||clathrin heavy chain Chc1 |Schizosaccharomyce... 29 0.47
SPCC5E4.04 |cut1||separase|Schizosaccharomyces pombe|chr 3|||Manual 26 4.4
SPBC216.07c |tor2|SPBC646.01c|phosphatidylinositol kinase Tor2|S... 26 4.4
SPBC1683.09c |frp1||ferric-chelate reductase Frp1|Schizosaccharo... 25 7.7
>SPBC32H8.12c |act1|cps8|actin |Schizosaccharomyces pombe|chr
2|||Manual
Length = 375
Score = 193 bits (470), Expect = 2e-50
Identities = 89/108 (82%), Positives = 93/108 (86%)
Frame = +3
Query: 240 GKAPPQGVMVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELR 419
G+ G+MVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIV NWDDMEKIWHHTFYNELR
Sbjct: 36 GRPRHHGIMVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIVNNWDDMEKIWHHTFYNELR 95
Query: 420 VAPEEHPILLTEAPLNPKANREKMTQIMFEHSTRPPCTFAIQTVLSLY 563
VAPEEHP LLTEAPLNPK+NREKMTQI+FE P AIQ VLSLY
Sbjct: 96 VAPEEHPCLLTEAPLNPKSNREKMTQIIFETFNAPAFYVAIQAVLSLY 143
Score = 84.2 bits (199), Expect = 1e-17
Identities = 36/39 (92%), Positives = 39/39 (100%)
Frame = +1
Query: 139 DEEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRH 255
+EE+AALV+DNGSGMCKAGFAGDDAPRAVFPSIVGRPRH
Sbjct: 2 EEEIAALVIDNGSGMCKAGFAGDDAPRAVFPSIVGRPRH 40
>SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 379
Score = 105 bits (251), Expect = 6e-24
Identities = 49/109 (44%), Positives = 71/109 (65%), Gaps = 1/109 (0%)
Frame = +3
Query: 240 GKAPPQGVMVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYN-EL 416
G+ + VM QKD +VG EAQ+ RG+L ++ PIE GI+ NW DME+IW + + + +L
Sbjct: 40 GRIKHERVMPSSIQKDMFVGSEAQNLRGLLKIQRPIERGIIQNWSDMEEIWSYIYSDQQL 99
Query: 417 RVAPEEHPILLTEAPLNPKANREKMTQIMFEHSTRPPCTFAIQTVLSLY 563
PEEHP+LLTE PL N+EK+ + +E P +F++Q VL+LY
Sbjct: 100 NTLPEEHPLLLTEPPLANIRNKEKIAEYFYETLNVPALSFSLQPVLALY 148
Score = 51.6 bits (118), Expect = 8e-08
Identities = 20/33 (60%), Positives = 26/33 (78%)
Frame = +1
Query: 157 LVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRH 255
+ +DNGSG KAGFAGDD P+ +FP+ VGR +H
Sbjct: 12 ICIDNGSGFIKAGFAGDDIPKCLFPTCVGRIKH 44
>SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex
subunit Arp2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 390
Score = 101 bits (243), Expect = 6e-23
Identities = 46/94 (48%), Positives = 66/94 (70%)
Frame = +3
Query: 282 KDSYVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPILLTEAP 461
KD VGDEA++ R +L +KYP+E+GI+ ++++M ++W +TF+ +L++ P ILLTE P
Sbjct: 50 KDVMVGDEAEAVRSLLQVKYPMENGIIRDFEEMNQLWDYTFFEKLKIDPRGRKILLTEPP 109
Query: 462 LNPKANREKMTQIMFEHSTRPPCTFAIQTVLSLY 563
+NP ANREKM + MFE AIQ VLSLY
Sbjct: 110 MNPVANREKMCETMFERYGFGGVYVAIQAVLSLY 143
Score = 49.2 bits (112), Expect = 4e-07
Identities = 23/39 (58%), Positives = 28/39 (71%)
Frame = +1
Query: 145 EVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHRA 261
E A +V+DNG+G K G+A D+ PR FPSIVGRP RA
Sbjct: 2 ESAPIVLDNGTGFVKVGYAKDNFPRFQFPSIVGRPILRA 40
>SPAC630.03 |arp3|act2|actin-like protein Arp3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 427
Score = 88.2 bits (209), Expect = 7e-19
Identities = 41/93 (44%), Positives = 54/93 (58%), Gaps = 1/93 (1%)
Frame = +3
Query: 285 DSYVGDEAQSKRGI-LTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPILLTEAP 461
D ++G++A K +L YPI HG + NWD ME+ W + + LR PE+H LLTE P
Sbjct: 73 DFFIGNDALKKASAGYSLDYPIRHGQIENWDHMERFWQQSLFKYLRCEPEDHYFLLTEPP 132
Query: 462 LNPKANREKMTQIMFEHSTRPPCTFAIQTVLSL 560
LNP NRE +IMFE A+Q VL+L
Sbjct: 133 LNPPENRENTAEIMFESFNCAGLYIAVQAVLAL 165
Score = 40.7 bits (91), Expect = 1e-04
Identities = 14/28 (50%), Positives = 23/28 (82%)
Frame = +1
Query: 157 LVVDNGSGMCKAGFAGDDAPRAVFPSIV 240
+++DNG+G K G+AG+DAP VFP+++
Sbjct: 8 IIMDNGTGYSKLGYAGNDAPSYVFPTVI 35
>SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 721
Score = 59.3 bits (137), Expect = 4e-10
Identities = 30/98 (30%), Positives = 53/98 (54%), Gaps = 1/98 (1%)
Frame = +3
Query: 273 MGQKDSYVGDEAQSKRGILTL-KYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPILL 449
+ + + VG++ + G ++ + P E +++NWD ME++ +TF +L + EHPI +
Sbjct: 62 LSRTSTLVGNDTLIEVGSRSIARSPFERNVISNWDLMEQVLDYTFL-KLGIDRMEHPICM 120
Query: 450 TEAPLNPKANREKMTQIMFEHSTRPPCTFAIQTVLSLY 563
TE NP R MT+++FE P + I + S Y
Sbjct: 121 TEPLANPTYVRSTMTELLFELYNAPSVAYGIDGLFSFY 158
Score = 37.5 bits (83), Expect = 0.001
Identities = 16/34 (47%), Positives = 23/34 (67%)
Frame = +1
Query: 157 LVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHR 258
LV+DNGS +AG+ G+ P+ VF ++V R R R
Sbjct: 27 LVIDNGSWQLRAGWGGEKDPKLVFDNLVSRYRDR 60
>SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 433
Score = 57.6 bits (133), Expect = 1e-09
Identities = 29/70 (41%), Positives = 39/70 (55%)
Frame = +3
Query: 327 LTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPILLTEAPLNPKANREKMTQIMF 506
+ +K I +G V NWD +W + +L+ P EHPIL+TE NP NR K + MF
Sbjct: 63 MEIKNAIRNGWVENWDVTVDLWRYGLEQQLKTNPLEHPILITEPFDNPPENRVKTLETMF 122
Query: 507 EHSTRPPCTF 536
E S R P T+
Sbjct: 123 E-SLRCPATY 131
Score = 40.3 bits (90), Expect = 2e-04
Identities = 16/34 (47%), Positives = 24/34 (70%)
Frame = +1
Query: 142 EEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVG 243
+EV+A+V+D GS + GF+G+D P+ V PS G
Sbjct: 9 DEVSAIVIDPGSKWTRIGFSGEDIPKCVLPSYCG 42
>SPAC23D3.09 |arp42|arp4|SWI/SNF and RSC complex subunit
Arp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 430
Score = 46.0 bits (104), Expect = 4e-06
Identities = 27/100 (27%), Positives = 48/100 (48%), Gaps = 2/100 (2%)
Frame = +3
Query: 258 GVMVGMGQKDSYVGDEAQSKRGI--LTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPE 431
GV + ++ YV DE Q I + +K +GI+ +W+ W +L+V P
Sbjct: 41 GVRSDVTGRNKYVVDELQIHAPIPGMEVKNGKSNGIIQDWESTLYTWERGLKEKLQVNPT 100
Query: 432 EHPILLTEAPLNPKANREKMTQIMFEHSTRPPCTFAIQTV 551
E+ +++TE NP++ R+++ + FE P Q V
Sbjct: 101 EYAMMITEPSWNPQSVRQQIMEAAFEQLHVPAFYLTKQAV 140
Score = 36.7 bits (81), Expect = 0.002
Identities = 14/34 (41%), Positives = 23/34 (67%)
Frame = +1
Query: 142 EEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVG 243
EE+ +LV+D GS + G+AG+++P + PS G
Sbjct: 8 EEIPSLVIDPGSCWTRFGYAGEESPMTILPSYYG 41
>SPAC1071.06 |arp9||SWI/SNF and RSC complex subunit
Arp9|Schizosaccharomyces pombe|chr 1|||Manual
Length = 523
Score = 38.7 bits (86), Expect = 6e-04
Identities = 23/78 (29%), Positives = 36/78 (46%), Gaps = 4/78 (5%)
Frame = +3
Query: 342 PIEHGIVTNWDDMEKIWHHTFYNELRVAPEE----HPILLTEAPLNPKANREKMTQIMFE 509
PI+ G V +W+ ++ W H Y+ L P + +P+ L +RE TQ FE
Sbjct: 113 PIQRGRVVDWEALKAFWKH-LYSLLLKDPNDTTFRYPVCLVIPTYWSLYDRELATQFFFE 171
Query: 510 HSTRPPCTFAIQTVLSLY 563
P T A + ++ LY
Sbjct: 172 ECQVPGFTIAYEPLMGLY 189
>SPAC26A3.05 |chc1||clathrin heavy chain Chc1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1666
Score = 29.1 bits (62), Expect = 0.47
Identities = 16/44 (36%), Positives = 25/44 (56%), Gaps = 2/44 (4%)
Frame = +3
Query: 402 FYNELRVAPEEHPILLTE--APLNPKANREKMTQIMFEHSTRPP 527
+Y L E+HP+LLT+ A L P+ + ++ +I FE S P
Sbjct: 1399 YYRALNFYLEQHPMLLTDLLAALTPRIDHPRVIRI-FEKSENTP 1441
>SPCC5E4.04 |cut1||separase|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1828
Score = 25.8 bits (54), Expect = 4.4
Identities = 12/23 (52%), Positives = 14/23 (60%)
Frame = -2
Query: 184 TYRSHCLLPTRQLLRRTS*ISEI 116
TYR H +PT LL T +SEI
Sbjct: 168 TYRDHDAIPTATLLNPTLDVSEI 190
>SPBC216.07c |tor2|SPBC646.01c|phosphatidylinositol kinase
Tor2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 2337
Score = 25.8 bits (54), Expect = 4.4
Identities = 10/27 (37%), Positives = 17/27 (62%)
Frame = -1
Query: 338 FEGQDTSFALCLISYIRVLLSHTDHHA 258
+EG+DT+ +Y+R++L TD A
Sbjct: 74 YEGEDTTRITRFANYLRIILPGTDQKA 100
>SPBC1683.09c |frp1||ferric-chelate reductase
Frp1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 564
Score = 25.0 bits (52), Expect = 7.7
Identities = 11/29 (37%), Positives = 17/29 (58%)
Frame = +3
Query: 261 VMVGMGQKDSYVGDEAQSKRGILTLKYPI 347
+M+G +Y+G AQ KR +LT + I
Sbjct: 165 IMIGAIHGFAYIGLAAQGKRALLTARVTI 193
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,499,612
Number of Sequences: 5004
Number of extensions: 53052
Number of successful extensions: 140
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 122
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 138
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 238029836
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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