Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0643
         (541 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4H3.04c |||UPF0103 family|Schizosaccharomyces pombe|chr 1|||...    64   1e-11
SPAC630.05 |gyp7||GTPase activating protein Gyp7 |Schizosaccharo...    27   2.3  
SPCC1827.07c ||SPCP1E11.01c|SPX/EXS domain protein|Schizosacchar...    26   3.1  
SPAC6F12.16c |mtr4||ATP-dependent RNA helicase, TRAMP complex su...    25   5.4  
SPAC22H10.09 |||sequence orphan|Schizosaccharomyces pombe|chr 1|...    25   5.4  
SPBC6B1.07 |prp1|zer1|U4/U6 x U5 tri-snRNP complex subunit Prp1|...    25   5.4  
SPCC1322.04 |||UTP-glucose-1-phosphate uridylyltransferase |Schi...    25   7.2  
SPAC227.15 |||protein phosphatase regulatory subunit Reg1 |Schiz...    25   9.5  
SPBC1703.04 |mlh1||MutL family protein Mlh1 |Schizosaccharomyces...    25   9.5  

>SPAC4H3.04c |||UPF0103 family|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 309

 Score = 64.5 bits (150), Expect = 1e-11
 Identities = 33/92 (35%), Positives = 51/92 (55%), Gaps = 3/92 (3%)
 Frame = +2

Query: 254 IFILGPSHHVRIAGCALSSLDKYQTPLYDLTIDKQIYAELEAT-RQFDRMDEQTDENEHS 430
           +F+ GPSHH+    C +S      TPL DL +D+ +  +L A+   FD M    DE+EHS
Sbjct: 71  VFVFGPSHHIFTRKCLVSRASICSTPLGDLKVDEDLCQKLVASDNSFDSMTLDVDESEHS 130

Query: 431 IEMHLPYIA--KVMEEYKTSFTIIPILVSSLT 520
           +EM  P +A   + +       I+PI++ +LT
Sbjct: 131 LEMQFPLLAFHLLKQGCLGKVKIVPIMIGALT 162



 Score = 31.9 bits (69), Expect = 0.062
 Identities = 15/42 (35%), Positives = 24/42 (57%)
 Frame = +3

Query: 57  RQAYHAGCWYTENGSELSRQLDLWLSKADLTHGPARAIIAPH 182
           R+A HAG WY ++   L++QL  ++       G  R +I+PH
Sbjct: 6   REATHAGSWYLDDTELLTKQLKSFIKNPTPETG-KRFVISPH 46


>SPAC630.05 |gyp7||GTPase activating protein Gyp7
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 743

 Score = 26.6 bits (56), Expect = 2.3
 Identities = 11/25 (44%), Positives = 14/25 (56%)
 Frame = -3

Query: 419 FHRSARPSYRTDVWPLAPRIFVYRW 345
           FH   +PS R +VWP    + VY W
Sbjct: 408 FHGGIQPSLRKEVWPFL--LSVYPW 430


>SPCC1827.07c ||SPCP1E11.01c|SPX/EXS domain
           protein|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 682

 Score = 26.2 bits (55), Expect = 3.1
 Identities = 15/41 (36%), Positives = 22/41 (53%)
 Frame = +2

Query: 302 LSSLDKYQTPLYDLTIDKQIYAELEATRQFDRMDEQTDENE 424
           L  LD +  P  D+ +  QI ++   T   D MD+QTD +E
Sbjct: 639 LKPLD-FVKPHSDVFVSHQISSDKNYTDDEDSMDDQTDVDE 678


>SPAC6F12.16c |mtr4||ATP-dependent RNA helicase, TRAMP complex
           subunit Mtr4|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1117

 Score = 25.4 bits (53), Expect = 5.4
 Identities = 11/26 (42%), Positives = 15/26 (57%)
 Frame = +2

Query: 440 HLPYIAKVMEEYKTSFTIIPILVSSL 517
           HLP +     E K  F ++P L+SSL
Sbjct: 785 HLPEVHPPAAEDKGKFEVVPFLLSSL 810


>SPAC22H10.09 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 646

 Score = 25.4 bits (53), Expect = 5.4
 Identities = 10/16 (62%), Positives = 12/16 (75%)
 Frame = +3

Query: 396 GWTSRPMKMSIPLKCT 443
           GW+SRP K + PL CT
Sbjct: 627 GWSSRPQKATFPL-CT 641


>SPBC6B1.07 |prp1|zer1|U4/U6 x U5 tri-snRNP complex subunit
           Prp1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 906

 Score = 25.4 bits (53), Expect = 5.4
 Identities = 13/34 (38%), Positives = 17/34 (50%)
 Frame = +2

Query: 371 LEATRQFDRMDEQTDENEHSIEMHLPYIAKVMEE 472
           L AT  +D  DE+ D+   S+E HL    K   E
Sbjct: 76  LFATAPYDHEDEEADKIYQSVEEHLSKRRKSQRE 109


>SPCC1322.04 |||UTP-glucose-1-phosphate uridylyltransferase
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 506

 Score = 25.0 bits (52), Expect = 7.2
 Identities = 9/27 (33%), Positives = 17/27 (62%)
 Frame = +2

Query: 419 NEHSIEMHLPYIAKVMEEYKTSFTIIP 499
           N +++  HLP + +V+  ++ S  IIP
Sbjct: 323 NTNNLWFHLPSVKRVVNNHELSMEIIP 349


>SPAC227.15 |||protein phosphatase regulatory subunit Reg1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 873

 Score = 24.6 bits (51), Expect = 9.5
 Identities = 10/20 (50%), Positives = 13/20 (65%)
 Frame = -1

Query: 106 SSLPFSVYQHPAWYA*RQDI 47
           SS P+SV+ HP  Y  RQ +
Sbjct: 681 SSSPYSVFSHPPPYMGRQSL 700


>SPBC1703.04 |mlh1||MutL family protein Mlh1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 684

 Score = 24.6 bits (51), Expect = 9.5
 Identities = 10/28 (35%), Positives = 17/28 (60%)
 Frame = +2

Query: 443 LPYIAKVMEEYKTSFTIIPILVSSLTPE 526
           L  +  +  +Y   F  +P+L+SSLTP+
Sbjct: 573 LTAVPMLSPKYHPPFEQLPLLISSLTPK 600


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,217,968
Number of Sequences: 5004
Number of extensions: 44618
Number of successful extensions: 130
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 127
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 129
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 221892220
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)