Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--0643
(541 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
08_02_0087 + 12163706-12163757,12164877-12164961,12165039-121651... 99 3e-21
05_03_0442 + 14040280-14040371,14040449-14040517,14041217-140413... 40 0.001
09_04_0279 - 16349156-16349788,16352409-16353344 29 3.1
09_02_0135 - 4721645-4722277,4722952-4723014,4723361-4724287 29 3.1
11_01_0229 - 1771701-1774164,1774694-1774847,1774980-1775055,177... 27 7.2
01_07_0205 - 41978437-41980599,41980805-41981215 27 7.2
01_05_0600 + 23566223-23566355,23567752-23567855,23567958-235680... 27 7.2
06_03_0157 + 17337641-17337896,17337975-17338082,17338643-173389... 27 9.6
01_01_0615 - 4576554-4576560,4577808-4577824,4578776-4578911,457... 27 9.6
>08_02_0087 +
12163706-12163757,12164877-12164961,12165039-12165107,
12165757-12165869,12167570-12167681,12167784-12167927,
12169222-12169396,12169482-12169595,12169734-12169775,
12171093-12171193,12171515-12171623
Length = 371
Score = 98.7 bits (235), Expect = 3e-21
Identities = 45/96 (46%), Positives = 62/96 (64%)
Frame = +2
Query: 254 IFILGPSHHVRIAGCALSSLDKYQTPLYDLTIDKQIYAELEATRQFDRMDEQTDENEHSI 433
+F+LGPSHH CAL+ Y TP+ DL +D ++ EL AT +FD MD DE EHS+
Sbjct: 72 VFLLGPSHHYYTPKCALTRATIYSTPIGDLPVDHEVIEELNATGKFDFMDLSVDEAEHSM 131
Query: 434 EMHLPYIAKVMEEYKTSFTIIPILVSSLTPEKEAKY 541
EMHLPY++KV + + ++PILV +L + EA Y
Sbjct: 132 EMHLPYLSKVFQGHNVK--VVPILVGALNSQNEAMY 165
Score = 52.8 bits (121), Expect = 2e-07
Identities = 24/43 (55%), Positives = 28/43 (65%), Gaps = 1/43 (2%)
Frame = +3
Query: 57 RQAYHAGCWYTENGSELSRQLDLWLSKADLTHGP-ARAIIAPH 182
R+A HAG WYT N +L +LD WL A LT P RA+IAPH
Sbjct: 5 RRASHAGSWYTNNARKLDEELDGWLRAAGLTKSPDVRAVIAPH 47
>05_03_0442 +
14040280-14040371,14040449-14040517,14041217-14041329,
14043110-14043209,14044508-14044682,14044768-14044881,
14045157-14045287,14048401-14048464,14048585-14048624,
14049002-14049225,14049634-14049876,14050145-14050313,
14050569-14050873,14051325-14051511,14051622-14051775,
14052145-14052207,14052300-14052396,14052500-14052589
Length = 809
Score = 40.3 bits (90), Expect = 0.001
Identities = 16/35 (45%), Positives = 22/35 (62%)
Frame = +2
Query: 254 IFILGPSHHVRIAGCALSSLDKYQTPLYDLTIDKQ 358
+F+LGPSHH CAL+ Y TP+ DL +D +
Sbjct: 57 VFLLGPSHHYYTPKCALTRATIYSTPIGDLPVDHE 91
Score = 29.1 bits (62), Expect = 2.4
Identities = 14/28 (50%), Positives = 17/28 (60%), Gaps = 1/28 (3%)
Frame = +3
Query: 102 ELSRQLDLWLSKADLTHGP-ARAIIAPH 182
+L +LD WL A LT P A+IAPH
Sbjct: 5 KLDEELDGWLRAAGLTKSPDVSAVIAPH 32
>09_04_0279 - 16349156-16349788,16352409-16353344
Length = 522
Score = 28.7 bits (61), Expect = 3.1
Identities = 24/81 (29%), Positives = 41/81 (50%), Gaps = 1/81 (1%)
Frame = +2
Query: 287 IAGCALSSLDKYQTPLYDLTIDKQIYAELEATRQFDRM-DEQTDENEHSIEMHLPYIAKV 463
IAG SS + + + +L +++A+ AT + DR+ + NE I + LPYI +
Sbjct: 315 IAGGTESSSETIEWAISELLRKPEMFAK--ATEELDRIVGHRRWVNEKDI-LDLPYIEAI 371
Query: 464 MEEYKTSFTIIPILVSSLTPE 526
++E I P+L L+ E
Sbjct: 372 VKETMRLHPIGPLLAPRLSRE 392
>09_02_0135 - 4721645-4722277,4722952-4723014,4723361-4724287
Length = 540
Score = 28.7 bits (61), Expect = 3.1
Identities = 11/29 (37%), Positives = 18/29 (62%)
Frame = +2
Query: 440 HLPYIAKVMEEYKTSFTIIPILVSSLTPE 526
HLPYI +M+E ++P+LV ++ E
Sbjct: 382 HLPYIHAIMKETMRMHPVVPLLVPRMSRE 410
>11_01_0229 -
1771701-1774164,1774694-1774847,1774980-1775055,
1775439-1775477,1778516-1778674,1778741-1778851,
1779014-1779064,1779173-1779256
Length = 1045
Score = 27.5 bits (58), Expect = 7.2
Identities = 13/28 (46%), Positives = 18/28 (64%)
Frame = -1
Query: 358 LFIDGEIVKGSLVLVEGRKSASCDPHVV 275
L ++G + +G L L+E R A C PHVV
Sbjct: 437 LCLEGRVEEG-LKLIEARWGAGCIPHVV 463
>01_07_0205 - 41978437-41980599,41980805-41981215
Length = 857
Score = 27.5 bits (58), Expect = 7.2
Identities = 14/50 (28%), Positives = 26/50 (52%)
Frame = -3
Query: 335 KGESGTCRGTKERILRSSRGVMDPI*RSFNNHRTDLSICVRRASAAVGIS 186
+ ES RGT ++ R+ GV+DP+ + H + + ++ A V +S
Sbjct: 92 RAESIGSRGTATKVRRTFSGVLDPL-KVIPRHSKEFDVALQEELADVFVS 140
>01_05_0600 +
23566223-23566355,23567752-23567855,23567958-23568053,
23568134-23568253,23568543-23568710,23568921-23569012,
23569739-23569857,23570547-23570670,23570801-23570924,
23571291-23571359,23571470-23571561,23571645-23571722,
23571927-23571994,23572073-23572209
Length = 507
Score = 27.5 bits (58), Expect = 7.2
Identities = 13/26 (50%), Positives = 18/26 (69%)
Frame = -1
Query: 334 KGSLVLVEGRKSASCDPHVV*WTQYE 257
KGS+ LV+ R+SA CD H + Q+E
Sbjct: 299 KGSIRLVDLRQSALCDTHSQVFEQHE 324
>06_03_0157 +
17337641-17337896,17337975-17338082,17338643-17338908,
17339933-17340021,17340095-17340198,17340403-17340508,
17340600-17340675,17340772-17340883,17341719-17342250,
17343097-17343131,17343924-17343984,17344054-17344132,
17344266-17344349
Length = 635
Score = 27.1 bits (57), Expect = 9.6
Identities = 22/81 (27%), Positives = 39/81 (48%)
Frame = +2
Query: 206 LLGVRI*TSQSCGC*TIFILGPSHHVRIAGCALSSLDKYQTPLYDLTIDKQIYAELEATR 385
L+G+ S C F+ P H+V+ LS+L+ +TP D + ++ T
Sbjct: 109 LVGMMWHLPSSRKCLQQFVHAPLHYVQEK---LSTLESKETPEEDAGDKEWDNIDVSKTA 165
Query: 386 QFDRMDEQTDENEHSIEMHLP 448
+R+D +TD+ S + H+P
Sbjct: 166 NDERVDTKTDD---SSQNHMP 183
>01_01_0615 -
4576554-4576560,4577808-4577824,4578776-4578911,
4579488-4579543,4580540-4580635,4580864-4580927,
4581022-4581077,4581170-4581249,4581778-4581842,
4581970-4582177,4582889-4583447
Length = 447
Score = 27.1 bits (57), Expect = 9.6
Identities = 17/50 (34%), Positives = 23/50 (46%)
Frame = +1
Query: 226 DKSVLWLLNDLHIGSITPREDRRMRSFVPRQVPDSPLRSHHR*TNIRGAR 375
D W+L LH+ + D R+ F+ QVP +P S R R AR
Sbjct: 105 DGEAHWVL--LHLAPVFHASDGRVLHFLAVQVPIAPPASRRRTPPCRAAR 152
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,589,747
Number of Sequences: 37544
Number of extensions: 301259
Number of successful extensions: 808
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 793
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 807
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1198356516
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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