Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--0643
(541 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_2913| Best HMM Match : No HMM Matches (HMM E-Value=.) 54 1e-07
SB_4802| Best HMM Match : zf-C2H2 (HMM E-Value=9.1e-19) 29 2.4
SB_44490| Best HMM Match : TP2 (HMM E-Value=5.4) 29 3.2
SB_6380| Best HMM Match : MFS_1 (HMM E-Value=0.88) 29 3.2
SB_5854| Best HMM Match : Pkinase_Tyr (HMM E-Value=4.3e-17) 29 3.2
SB_11375| Best HMM Match : EGF_CA (HMM E-Value=0) 28 5.6
SB_33182| Best HMM Match : rve (HMM E-Value=0.00043) 27 9.8
SB_24886| Best HMM Match : Extensin_2 (HMM E-Value=0.0032) 27 9.8
SB_39575| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.8
SB_17421| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.8
>SB_2913| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 38
Score = 53.6 bits (123), Expect = 1e-07
Identities = 24/35 (68%), Positives = 27/35 (77%)
Frame = +2
Query: 365 AELEATRQFDRMDEQTDENEHSIEMHLPYIAKVME 469
AEL T FD M +TDE+EHSIE+HLPYIAK ME
Sbjct: 3 AELMGTGFFDEMSSKTDEDEHSIELHLPYIAKAME 37
>SB_4802| Best HMM Match : zf-C2H2 (HMM E-Value=9.1e-19)
Length = 374
Score = 29.1 bits (62), Expect = 2.4
Identities = 17/60 (28%), Positives = 29/60 (48%)
Frame = +2
Query: 254 IFILGPSHHVRIAGCALSSLDKYQTPLYDLTIDKQIYAELEATRQFDRMDEQTDENEHSI 433
+F L H+ R+A A+SS + +TP +T + E T+Q D + + HS+
Sbjct: 5 LFDLLAYHNQRVAAAAISSQSQNKTPQPHVTQSNHVTPE-HVTQQPDTKHQSPSTSSHSV 63
>SB_44490| Best HMM Match : TP2 (HMM E-Value=5.4)
Length = 174
Score = 28.7 bits (61), Expect = 3.2
Identities = 14/29 (48%), Positives = 17/29 (58%), Gaps = 1/29 (3%)
Frame = +2
Query: 260 ILGPSHHVRIAGCA-LSSLDKYQTPLYDL 343
I G H R GC L++L+KYQ P Y L
Sbjct: 59 IKGTRTHTRTPGCEILATLNKYQLPTYKL 87
>SB_6380| Best HMM Match : MFS_1 (HMM E-Value=0.88)
Length = 715
Score = 28.7 bits (61), Expect = 3.2
Identities = 14/29 (48%), Positives = 17/29 (58%), Gaps = 1/29 (3%)
Frame = +2
Query: 260 ILGPSHHVRIAGCA-LSSLDKYQTPLYDL 343
I G H R GC L++L+KYQ P Y L
Sbjct: 600 IKGTRTHTRTPGCEILATLNKYQLPTYKL 628
>SB_5854| Best HMM Match : Pkinase_Tyr (HMM E-Value=4.3e-17)
Length = 1850
Score = 28.7 bits (61), Expect = 3.2
Identities = 24/84 (28%), Positives = 38/84 (45%), Gaps = 4/84 (4%)
Frame = +2
Query: 263 LGPSHHVRIAGCALSSLDKYQTPLYDLTIDKQIYAELEATRQFDRMDEQT-DENEHSIEM 439
L P H +A + S+ + I KQI A +E +FD + T +E E+ +E
Sbjct: 859 LRPLRHENLA--EIKSISPLGSDFEVACIPKQIAALIERCTEFDSRERPTAEEVENELEA 916
Query: 440 HLPYI---AKVMEEYKTSFTIIPI 502
+ YI K+ + + T T PI
Sbjct: 917 YQSYIRSSGKIKQMHVTIITSQPI 940
Score = 27.5 bits (58), Expect = 7.4
Identities = 16/49 (32%), Positives = 26/49 (53%), Gaps = 1/49 (2%)
Frame = +2
Query: 332 LYDLTIDKQIYAELEATRQFDRMDEQT-DENEHSIEMHLPYIAKVMEEY 475
L + I KQI A +E +FD + T +E E+ +E + YI E++
Sbjct: 742 LSEACIPKQIAALIERCTEFDSRERPTAEEVENELEAYQSYIRSSGEDH 790
>SB_11375| Best HMM Match : EGF_CA (HMM E-Value=0)
Length = 651
Score = 27.9 bits (59), Expect = 5.6
Identities = 20/66 (30%), Positives = 31/66 (46%)
Frame = +2
Query: 332 LYDLTIDKQIYAELEATRQFDRMDEQTDENEHSIEMHLPYIAKVMEEYKTSFTIIPILVS 511
L D+ D+Q E MD T H + H+P A+V++ T+F + I++
Sbjct: 378 LLDVLQDQQNMTTKEVEDTVSVMDNIT----HKLTSHVPESAQVIKNLVTNF--VGIMIH 431
Query: 512 SLTPEK 529
L PEK
Sbjct: 432 VLAPEK 437
>SB_33182| Best HMM Match : rve (HMM E-Value=0.00043)
Length = 801
Score = 27.1 bits (57), Expect = 9.8
Identities = 9/24 (37%), Positives = 17/24 (70%)
Frame = +1
Query: 277 PREDRRMRSFVPRQVPDSPLRSHH 348
P++DR +R+ +P Q D+P+ H+
Sbjct: 413 PQKDRALRAALPEQETDTPVAIHY 436
>SB_24886| Best HMM Match : Extensin_2 (HMM E-Value=0.0032)
Length = 807
Score = 27.1 bits (57), Expect = 9.8
Identities = 9/18 (50%), Positives = 12/18 (66%)
Frame = -1
Query: 127 HKSSCRESSLPFSVYQHP 74
H +C SS+PFS +HP
Sbjct: 706 HDQACASSSIPFSTTKHP 723
>SB_39575| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 770
Score = 27.1 bits (57), Expect = 9.8
Identities = 9/24 (37%), Positives = 17/24 (70%)
Frame = +1
Query: 277 PREDRRMRSFVPRQVPDSPLRSHH 348
P++DR +R+ +P Q D+P+ H+
Sbjct: 384 PQKDRALRAALPEQETDTPVAIHY 407
>SB_17421| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 555
Score = 27.1 bits (57), Expect = 9.8
Identities = 9/16 (56%), Positives = 12/16 (75%)
Frame = -3
Query: 410 SARPSYRTDVWPLAPR 363
SARP+ D+WP+ PR
Sbjct: 313 SARPNQAADLWPMPPR 328
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,931,270
Number of Sequences: 59808
Number of extensions: 362363
Number of successful extensions: 820
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 744
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 819
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1227799733
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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