Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0643
         (541 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U64857-9|AAC25863.3|  302|Caenorhabditis elegans Hypothetical pr...   108   2e-24
U64857-8|AAM29667.1|  350|Caenorhabditis elegans Hypothetical pr...   108   2e-24
AF068719-3|AAM45352.1|  603|Caenorhabditis elegans Hypothetical ...    32   0.23 
AF068719-2|AAC17783.1|  633|Caenorhabditis elegans Hypothetical ...    32   0.23 
Z78016-1|CAB01439.1|  276|Caenorhabditis elegans Hypothetical pr...    29   1.6  
U00036-16|AAK29860.1|  233|Caenorhabditis elegans Hypothetical p...    29   2.1  
AF143147-1|AAD37862.1|  233|Caenorhabditis elegans R151.8A prote...    29   2.1  
AF039712-3|AAK21400.3|  393|Caenorhabditis elegans Hypothetical ...    28   4.9  
Z81487-7|CAB04001.2|  495|Caenorhabditis elegans Hypothetical pr...    27   6.5  
AL021470-4|CAA16294.2|  495|Caenorhabditis elegans Hypothetical ...    27   6.5  

>U64857-9|AAC25863.3|  302|Caenorhabditis elegans Hypothetical
           protein C37C3.8a protein.
          Length = 302

 Score =  108 bits (260), Expect = 2e-24
 Identities = 51/96 (53%), Positives = 69/96 (71%)
 Frame = +2

Query: 254 IFILGPSHHVRIAGCALSSLDKYQTPLYDLTIDKQIYAELEATRQFDRMDEQTDENEHSI 433
           +FILGPSH V + GCA+++  KY+TPL DL +D +I  EL ATR FD MD + +E+EHSI
Sbjct: 77  VFILGPSHVVALNGCAITTCSKYRTPLGDLIVDHKINEELRATRHFDLMDRRDEESEHSI 136

Query: 434 EMHLPYIAKVMEEYKTSFTIIPILVSSLTPEKEAKY 541
           EM LP+IAKVM   +  +TI+P+LV SL   ++  Y
Sbjct: 137 EMQLPFIAKVMGSKR--YTIVPVLVGSLPGSRQQTY 170



 Score = 50.0 bits (114), Expect = 1e-06
 Identities = 26/66 (39%), Positives = 31/66 (46%)
 Frame = +3

Query: 57  RQAYHAGCWYTENGSELSRQLDLWLSKADLTHGPARAIIAPHXXXXXXXXXXXXXXRQVS 236
           R A HAG WY  N  +L RQL  WL  A    G ARA+I+PH              +QV 
Sbjct: 11  RSASHAGSWYNANQRDLDRQLTKWLDNAGPRIGTARALISPHAGYSYCGETAAYAFKQVV 70

Query: 237 PVVVKR 254
              V+R
Sbjct: 71  SSAVER 76


>U64857-8|AAM29667.1|  350|Caenorhabditis elegans Hypothetical
           protein C37C3.8b protein.
          Length = 350

 Score =  108 bits (260), Expect = 2e-24
 Identities = 51/96 (53%), Positives = 69/96 (71%)
 Frame = +2

Query: 254 IFILGPSHHVRIAGCALSSLDKYQTPLYDLTIDKQIYAELEATRQFDRMDEQTDENEHSI 433
           +FILGPSH V + GCA+++  KY+TPL DL +D +I  EL ATR FD MD + +E+EHSI
Sbjct: 125 VFILGPSHVVALNGCAITTCSKYRTPLGDLIVDHKINEELRATRHFDLMDRRDEESEHSI 184

Query: 434 EMHLPYIAKVMEEYKTSFTIIPILVSSLTPEKEAKY 541
           EM LP+IAKVM   +  +TI+P+LV SL   ++  Y
Sbjct: 185 EMQLPFIAKVMGSKR--YTIVPVLVGSLPGSRQQTY 218



 Score = 50.0 bits (114), Expect = 1e-06
 Identities = 26/66 (39%), Positives = 31/66 (46%)
 Frame = +3

Query: 57  RQAYHAGCWYTENGSELSRQLDLWLSKADLTHGPARAIIAPHXXXXXXXXXXXXXXRQVS 236
           R A HAG WY  N  +L RQL  WL  A    G ARA+I+PH              +QV 
Sbjct: 59  RSASHAGSWYNANQRDLDRQLTKWLDNAGPRIGTARALISPHAGYSYCGETAAYAFKQVV 118

Query: 237 PVVVKR 254
              V+R
Sbjct: 119 SSAVER 124


>AF068719-3|AAM45352.1|  603|Caenorhabditis elegans Hypothetical
           protein H14N18.4b protein.
          Length = 603

 Score = 32.3 bits (70), Expect = 0.23
 Identities = 16/59 (27%), Positives = 35/59 (59%)
 Frame = +2

Query: 323 QTPLYDLTIDKQIYAELEATRQFDRMDEQTDENEHSIEMHLPYIAKVMEEYKTSFTIIP 499
           QT +  L  ++ + A ++A R  ++   +T E E ++ + L  +  ++E+YK +FT++P
Sbjct: 514 QTVIRTLLFNQTVKAAVDAPRFHNQYLPETTETEEAMPLALREV--LVEQYKQNFTVVP 570


>AF068719-2|AAC17783.1|  633|Caenorhabditis elegans Hypothetical
           protein H14N18.4a protein.
          Length = 633

 Score = 32.3 bits (70), Expect = 0.23
 Identities = 16/59 (27%), Positives = 35/59 (59%)
 Frame = +2

Query: 323 QTPLYDLTIDKQIYAELEATRQFDRMDEQTDENEHSIEMHLPYIAKVMEEYKTSFTIIP 499
           QT +  L  ++ + A ++A R  ++   +T E E ++ + L  +  ++E+YK +FT++P
Sbjct: 544 QTVIRTLLFNQTVKAAVDAPRFHNQYLPETTETEEAMPLALREV--LVEQYKQNFTVVP 600


>Z78016-1|CAB01439.1|  276|Caenorhabditis elegans Hypothetical
           protein R186.1 protein.
          Length = 276

 Score = 29.5 bits (63), Expect = 1.6
 Identities = 12/28 (42%), Positives = 19/28 (67%)
 Frame = +1

Query: 448 LHSQSHGGVQNQFHDYTDFSKLSDSRKR 531
           LH+ S GG+ N+F +  D SK+ +S K+
Sbjct: 79  LHAPSRGGIVNEFLNANDTSKMIESLKK 106


>U00036-16|AAK29860.1|  233|Caenorhabditis elegans Hypothetical
           protein R151.10 protein.
          Length = 233

 Score = 29.1 bits (62), Expect = 2.1
 Identities = 16/39 (41%), Positives = 24/39 (61%), Gaps = 1/39 (2%)
 Frame = +1

Query: 181 TPDIPTAALARRTHIDKSVLWLLNDLHIGS-ITPREDRR 294
           T D+    + +R H D+S+ WL+N+L IG  +TP E  R
Sbjct: 39  TMDLKRRQMGKR-H-DESIRWLINELKIGDLVTPEEYSR 75


>AF143147-1|AAD37862.1|  233|Caenorhabditis elegans R151.8A protein
           protein.
          Length = 233

 Score = 29.1 bits (62), Expect = 2.1
 Identities = 16/39 (41%), Positives = 24/39 (61%), Gaps = 1/39 (2%)
 Frame = +1

Query: 181 TPDIPTAALARRTHIDKSVLWLLNDLHIGS-ITPREDRR 294
           T D+    + +R H D+S+ WL+N+L IG  +TP E  R
Sbjct: 39  TMDLKRRQMGKR-H-DESIRWLINELKIGDLVTPEEYSR 75


>AF039712-3|AAK21400.3|  393|Caenorhabditis elegans Hypothetical
           protein F54D7.2 protein.
          Length = 393

 Score = 27.9 bits (59), Expect = 4.9
 Identities = 13/24 (54%), Positives = 17/24 (70%), Gaps = 1/24 (4%)
 Frame = -1

Query: 136 FDSHKSSCRESSLPFSVY-QHPAW 68
           FDS+K +C ++S P SVY  HP W
Sbjct: 24  FDSYKYNCVDNS-PLSVYVSHPFW 46


>Z81487-7|CAB04001.2|  495|Caenorhabditis elegans Hypothetical
           protein Y17D7A.4 protein.
          Length = 495

 Score = 27.5 bits (58), Expect = 6.5
 Identities = 17/63 (26%), Positives = 32/63 (50%)
 Frame = +2

Query: 332 LYDLTIDKQIYAELEATRQFDRMDEQTDENEHSIEMHLPYIAKVMEEYKTSFTIIPILVS 511
           LY+  + ++I  EL+     DR+    D+N+      LPY+   + E + +  IIP+ + 
Sbjct: 318 LYNPEVQRKIREELDKVIGNDRLISTADKND------LPYLQAFVTETQRTANIIPLNLI 371

Query: 512 SLT 520
            +T
Sbjct: 372 HMT 374


>AL021470-4|CAA16294.2|  495|Caenorhabditis elegans Hypothetical
           protein Y17D7A.4 protein.
          Length = 495

 Score = 27.5 bits (58), Expect = 6.5
 Identities = 17/63 (26%), Positives = 32/63 (50%)
 Frame = +2

Query: 332 LYDLTIDKQIYAELEATRQFDRMDEQTDENEHSIEMHLPYIAKVMEEYKTSFTIIPILVS 511
           LY+  + ++I  EL+     DR+    D+N+      LPY+   + E + +  IIP+ + 
Sbjct: 318 LYNPEVQRKIREELDKVIGNDRLISTADKND------LPYLQAFVTETQRTANIIPLNLI 371

Query: 512 SLT 520
            +T
Sbjct: 372 HMT 374


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,275,511
Number of Sequences: 27780
Number of extensions: 251775
Number of successful extensions: 637
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 623
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 635
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1081316076
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)