Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0643
         (541 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamat...    25   0.37 
AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase...    22   4.6  
AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor pr...    21   6.1  
AB022908-1|BAA86909.1|  493|Apis mellifera amylase protein.            21   8.1  

>AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 933

 Score = 25.4 bits (53), Expect = 0.37
 Identities = 12/25 (48%), Positives = 15/25 (60%)
 Frame = -1

Query: 352 IDGEIVKGSLVLVEGRKSASCDPHV 278
           I G+IV G L  V  +  ASC P+V
Sbjct: 53  IPGDIVLGGLFPVHEKGGASCGPNV 77


>AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase
           protein.
          Length = 1143

 Score = 21.8 bits (44), Expect = 4.6
 Identities = 8/26 (30%), Positives = 16/26 (61%)
 Frame = +2

Query: 446 PYIAKVMEEYKTSFTIIPILVSSLTP 523
           P + +V++E+ +     P+L+  LTP
Sbjct: 868 PNLVEVLDEFPSVRPFAPLLLLHLTP 893


>AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor
           protein.
          Length = 501

 Score = 21.4 bits (43), Expect = 6.1
 Identities = 6/14 (42%), Positives = 11/14 (78%)
 Frame = -2

Query: 96  HFRCTNIQHGMLDD 55
           +FRC+N+ H M ++
Sbjct: 443 YFRCSNLNHMMREE 456


>AB022908-1|BAA86909.1|  493|Apis mellifera amylase protein.
          Length = 493

 Score = 21.0 bits (42), Expect = 8.1
 Identities = 9/21 (42%), Positives = 10/21 (47%)
 Frame = -1

Query: 508 Y*NRYNRETGFVLLHDFGYVR 446
           Y  RY     F+L H FG  R
Sbjct: 322 YSKRYKMAVAFMLSHPFGTPR 342


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 148,593
Number of Sequences: 438
Number of extensions: 3413
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 15336375
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)