Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0643
         (541 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g25280.1 68415.m03024 expressed protein                             99   2e-21
At3g42436.1 68416.m04393 hypothetical protein                          29   1.5  
At2g28620.1 68415.m03479 kinesin motor protein-related                 29   2.0  
At3g04910.1 68416.m00533 protein kinase family protein contains ...    28   4.6  
At2g46180.1 68415.m05742 intracellular protein transport protein...    27   8.0  

>At2g25280.1 68415.m03024 expressed protein
          Length = 291

 Score = 98.7 bits (235), Expect = 2e-21
 Identities = 46/96 (47%), Positives = 65/96 (67%)
 Frame = +2

Query: 254 IFILGPSHHVRIAGCALSSLDKYQTPLYDLTIDKQIYAELEATRQFDRMDEQTDENEHSI 433
           IF+LGPSHH     CALS+   Y+TP+ +L +D ++  E+ A  +F  MD + DE EHS+
Sbjct: 72  IFLLGPSHHFYTPKCALSTATVYKTPIGNLPVDVEMIKEIRAMGKFGMMDLRVDEAEHSM 131

Query: 434 EMHLPYIAKVMEEYKTSFTIIPILVSSLTPEKEAKY 541
           EMHLPY+AKV E    +  ++PILV +++PE EA Y
Sbjct: 132 EMHLPYLAKVFE--GNNVKVVPILVGAVSPENEAMY 165



 Score = 50.0 bits (114), Expect = 1e-06
 Identities = 22/43 (51%), Positives = 28/43 (65%), Gaps = 1/43 (2%)
 Frame = +3

Query: 57  RQAYHAGCWYTENGSELSRQLDLWLSKADLTHGP-ARAIIAPH 182
           RQ  HAG WYT+N ++LS  L+ WL+   LT  P  R +IAPH
Sbjct: 5   RQPTHAGSWYTDNPTKLSSDLEEWLNATGLTKSPDVRGVIAPH 47


>At3g42436.1 68416.m04393 hypothetical protein
          Length = 398

 Score = 29.5 bits (63), Expect = 1.5
 Identities = 15/34 (44%), Positives = 21/34 (61%)
 Frame = +1

Query: 190 IPTAALARRTHIDKSVLWLLNDLHIGSITPREDR 291
           I T    +R  I+KSVL L ND+ +G+I  R+ R
Sbjct: 70  ISTGNSLKRLQIEKSVLGLENDIGLGTICCRQKR 103


>At2g28620.1 68415.m03479 kinesin motor protein-related 
          Length = 1076

 Score = 29.1 bits (62), Expect = 2.0
 Identities = 14/54 (25%), Positives = 27/54 (50%)
 Frame = +2

Query: 320  YQTPLYDLTIDKQIYAELEATRQFDRMDEQTDENEHSIEMHLPYIAKVMEEYKT 481
            Y   +Y + +DK +  +L + +   ++DE T       E ++P +  + EE KT
Sbjct: 986  YNHHIYMIELDKIVNRKLNSLKTSTQVDEATSSTPRKREYNIPTVGSI-EELKT 1038


>At3g04910.1 68416.m00533 protein kinase family protein contains
           protein kinase domain, Pfam:PF00069
          Length = 700

 Score = 27.9 bits (59), Expect = 4.6
 Identities = 14/44 (31%), Positives = 23/44 (52%)
 Frame = -2

Query: 279 WCDGPNMKIV*QPQD*LVYMRTPSKRRSRNIRREVLLSLWPARG 148
           +CD P+ K   Q Q  L +++   +   R+I+ E L + WP  G
Sbjct: 606 YCDEPSEKTENQVQQELRWLKAKCQIELRDIQDEQLKTRWPESG 649


>At2g46180.1 68415.m05742 intracellular protein transport protein
           USO1-related similar to Intracellular protein transport
           protein USO1 (Swiss-Prot:P25386) [Saccharomyces
           cerevisiae]
          Length = 725

 Score = 27.1 bits (57), Expect = 8.0
 Identities = 19/66 (28%), Positives = 31/66 (46%), Gaps = 1/66 (1%)
 Frame = +2

Query: 284 RIAGCALSSLDKYQTPLYDL-TIDKQIYAELEATRQFDRMDEQTDENEHSIEMHLPYIAK 460
           ++A C L ++D     L +L T   Q YAE+EA   F+R      E+   +   L  + +
Sbjct: 451 KLANC-LRTIDSKNVELLNLQTALGQYYAEIEAKEHFERELAVAKEDAMKLSARLKDVDE 509

Query: 461 VMEEYK 478
            +E  K
Sbjct: 510 QLESSK 515


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,640,205
Number of Sequences: 28952
Number of extensions: 236376
Number of successful extensions: 636
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 617
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 635
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1003808112
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)