Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0641
         (561 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC26A3.06 |||methyltransferase |Schizosaccharomyces pombe|chr ...    26   4.4  
SPBC16E9.02c |||CUE domain protein Cue5 |Schizosaccharomyces pom...    26   4.4  
SPBC21D10.08c |||sequence orphan|Schizosaccharomyces pombe|chr 2...    25   5.8  

>SPAC26A3.06 |||methyltransferase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 268

 Score = 25.8 bits (54), Expect = 4.4
 Identities = 9/31 (29%), Positives = 18/31 (58%)
 Frame = +1

Query: 295 TCSIEQAEAVRQYYAAFPALKKGQESPLQYY 387
           TC++ Q    R +   + ++K+G  + +QYY
Sbjct: 129 TCNVPQRRLNRFFQTLYISMKRGGRAVMQYY 159


>SPBC16E9.02c |||CUE domain protein Cue5 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 569

 Score = 25.8 bits (54), Expect = 4.4
 Identities = 13/29 (44%), Positives = 15/29 (51%), Gaps = 2/29 (6%)
 Frame = +3

Query: 471 ELEE*EVCGKRTTNSY--HRQRRNRKRXN 551
           +LEE E C +   N Y  HR  R RK  N
Sbjct: 88  QLEEDERCARELANRYNSHRPERRRKTNN 116


>SPBC21D10.08c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 277

 Score = 25.4 bits (53), Expect = 5.8
 Identities = 10/31 (32%), Positives = 18/31 (58%)
 Frame = +2

Query: 149 VKITSTHSTLHHLIPTVCIQEHNLGNIVDQL 241
           +K+T+ H T   ++  V   EHNL   ++Q+
Sbjct: 134 LKVTNNHITHATIVGQVSGSEHNLSTAIEQV 164


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,411,471
Number of Sequences: 5004
Number of extensions: 49563
Number of successful extensions: 107
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 99
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 107
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 236012634
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)