Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0641
         (561 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_06_1054 + 34133087-34133417,34133546-34133862,34133988-34134158     30   1.1  
03_05_0731 - 27213777-27215177,27218188-27218405,27218504-27218648     29   3.4  
03_02_0858 + 11848128-11848287,11848906-11848973,11849281-118494...    29   3.4  
10_01_0098 - 1193184-1193703,1193814-1193872                           28   4.4  
07_01_0168 + 1179292-1180354,1180880-1180923                           28   4.4  

>01_06_1054 + 34133087-34133417,34133546-34133862,34133988-34134158
          Length = 272

 Score = 30.3 bits (65), Expect = 1.1
 Identities = 13/42 (30%), Positives = 20/42 (47%)
 Frame = +1

Query: 346 PALKKGQESPLQYYLPPPAWCHKTVTEVTAKMQCQLSPSKDW 471
           PAL+ G   P ++ L PP W    V  + +   CQ   ++ W
Sbjct: 106 PALRAGNVQPYEFIL-PPTWKQTRVANILSGNYCQPKCAEPW 146


>03_05_0731 - 27213777-27215177,27218188-27218405,27218504-27218648
          Length = 587

 Score = 28.7 bits (61), Expect = 3.4
 Identities = 23/75 (30%), Positives = 33/75 (44%), Gaps = 2/75 (2%)
 Frame = +1

Query: 145 PRQDHFNTLHTSSSDTYSLHSGTQFRKHC*SAVY*SPDIKDHEDSVIGMP--TCSIEQAE 318
           P+QD F+  HTS+  T   H+  QFR    +A+   PD      +    P   CS++Q E
Sbjct: 282 PKQDLFDPPHTSAIVTKLAHT-DQFRCLDKAAIVSGPDDVRAGGAAPSNPWRLCSVQQVE 340

Query: 319 AVRQYYAAFPALKKG 363
            V+      P    G
Sbjct: 341 EVKCLIRIVPVWSTG 355


>03_02_0858 +
           11848128-11848287,11848906-11848973,11849281-11849403,
           11850796-11851128,11851199-11851321,11851414-11851632
          Length = 341

 Score = 28.7 bits (61), Expect = 3.4
 Identities = 11/24 (45%), Positives = 17/24 (70%)
 Frame = -2

Query: 458 GDNWHCILAVTSVTVL*HQAGGGR 387
           G+ +HCI  V+ V+++   AGGGR
Sbjct: 293 GEGFHCIRTVSDVSLVLDAAGGGR 316


>10_01_0098 - 1193184-1193703,1193814-1193872
          Length = 192

 Score = 28.3 bits (60), Expect = 4.4
 Identities = 18/59 (30%), Positives = 27/59 (45%), Gaps = 3/59 (5%)
 Frame = -1

Query: 522 GGKSWSFFSHKLLI---PQAPILGRRQLALHFGCDFSDSLMTPSRWRQIILQR*LLPFL 355
           GG+SW+ +    L+   P  P    + L  +    F  + M+PSRW  +   R L P L
Sbjct: 43  GGESWAAWEPNALVGLHPCRPAFSAQPLGFYIDDLFPKASMSPSRWLWVRKGRGLDPEL 101


>07_01_0168 + 1179292-1180354,1180880-1180923
          Length = 368

 Score = 28.3 bits (60), Expect = 4.4
 Identities = 10/26 (38%), Positives = 17/26 (65%)
 Frame = +2

Query: 5   FIHTAHGDSKMDSRDLCAMMVFDNDR 82
           F+HT HGD +M+ + L    +++ DR
Sbjct: 316 FLHTIHGDYRMELKSLQISKLWEKDR 341


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,177,350
Number of Sequences: 37544
Number of extensions: 339350
Number of successful extensions: 778
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 764
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 777
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1281410928
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)