Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0641
         (561 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY391745-1|AAR28995.1|  460|Anopheles gambiae putative GPCR prot...    24   3.9  
AY705394-1|AAU12503.1|  557|Anopheles gambiae nicotinic acetylch...    23   5.2  
AB090812-2|BAC57900.1| 1173|Anopheles gambiae reverse transcript...    23   6.8  
CR954256-3|CAJ14144.1|  659|Anopheles gambiae cyclin protein.          23   9.0  

>AY391745-1|AAR28995.1|  460|Anopheles gambiae putative GPCR
           protein.
          Length = 460

 Score = 23.8 bits (49), Expect = 3.9
 Identities = 13/40 (32%), Positives = 17/40 (42%)
 Frame = +3

Query: 252 SGHKRSRRFCHRYANVFYRTSRGCTSILRCISSSEERARV 371
           +GH         Y  +F+ T+ G   IL CIS    R  V
Sbjct: 349 TGHSYLTILVQYYCYLFFITNFGINFILYCISGQNFRKAV 388


>AY705394-1|AAU12503.1|  557|Anopheles gambiae nicotinic
           acetylcholine receptor subunitalpha 1 protein.
          Length = 557

 Score = 23.4 bits (48), Expect = 5.2
 Identities = 10/33 (30%), Positives = 17/33 (51%)
 Frame = +1

Query: 370 SPLQYYLPPPAWCHKTVTEVTAKMQCQLSPSKD 468
           SP+ + + P  W H+   E+  K+ C   P K+
Sbjct: 330 SPVTHRMAP--WVHRVFIELLPKVLCIERPKKE 360


>AB090812-2|BAC57900.1| 1173|Anopheles gambiae reverse transcriptase
           protein.
          Length = 1173

 Score = 23.0 bits (47), Expect = 6.8
 Identities = 10/20 (50%), Positives = 13/20 (65%)
 Frame = +1

Query: 475 LRNKKFVGKERPTLTTDKEE 534
           LRN+    +ER  LTTD +E
Sbjct: 320 LRNECIAARERMRLTTDLQE 339


>CR954256-3|CAJ14144.1|  659|Anopheles gambiae cyclin protein.
          Length = 659

 Score = 22.6 bits (46), Expect = 9.0
 Identities = 10/26 (38%), Positives = 15/26 (57%)
 Frame = +3

Query: 96  RMRKHKRESRAIACGPATSRSLQHTP 173
           R R+ +   RA    PAT+R ++H P
Sbjct: 500 RARRRRCRPRARRNPPATTRPVRHRP 525


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 626,855
Number of Sequences: 2352
Number of extensions: 13541
Number of successful extensions: 17
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 17
length of database: 563,979
effective HSP length: 61
effective length of database: 420,507
effective search space used: 52563375
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)