Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0641
         (561 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

X75886-1|CAA53480.1|  621|Drosophila melanogaster nuclear lamin ...    29   4.3  
L07933-1|AAA28666.1|  621|Drosophila melanogaster lamin C like p...    29   4.3  
AY095046-1|AAM11374.1|  621|Drosophila melanogaster LD31805p pro...    29   4.3  
AE013599-1908|AAF58237.1|  621|Drosophila melanogaster CG10119-P...    29   4.3  
BT011122-1|AAR82789.1|  201|Drosophila melanogaster LD11394p pro...    28   7.5  
AE014298-2000|AAF48343.1|  186|Drosophila melanogaster CG1368-PA...    28   7.5  

>X75886-1|CAA53480.1|  621|Drosophila melanogaster nuclear lamin C
           protein protein.
          Length = 621

 Score = 29.1 bits (62), Expect = 4.3
 Identities = 12/21 (57%), Positives = 14/21 (66%)
 Frame = +2

Query: 482 IRSLWEKNDQLLPPTKKKQKE 544
           I+ LWE+ND L P   KK KE
Sbjct: 121 IKRLWEENDDLKPRLDKKTKE 141


>L07933-1|AAA28666.1|  621|Drosophila melanogaster lamin C like
           protein protein.
          Length = 621

 Score = 29.1 bits (62), Expect = 4.3
 Identities = 12/21 (57%), Positives = 14/21 (66%)
 Frame = +2

Query: 482 IRSLWEKNDQLLPPTKKKQKE 544
           I+ LWE+ND L P   KK KE
Sbjct: 121 IKRLWEENDDLKPRLDKKTKE 141


>AY095046-1|AAM11374.1|  621|Drosophila melanogaster LD31805p
           protein.
          Length = 621

 Score = 29.1 bits (62), Expect = 4.3
 Identities = 12/21 (57%), Positives = 14/21 (66%)
 Frame = +2

Query: 482 IRSLWEKNDQLLPPTKKKQKE 544
           I+ LWE+ND L P   KK KE
Sbjct: 121 IKRLWEENDDLKPRLDKKTKE 141


>AE013599-1908|AAF58237.1|  621|Drosophila melanogaster CG10119-PA
           protein.
          Length = 621

 Score = 29.1 bits (62), Expect = 4.3
 Identities = 12/21 (57%), Positives = 14/21 (66%)
 Frame = +2

Query: 482 IRSLWEKNDQLLPPTKKKQKE 544
           I+ LWE+ND L P   KK KE
Sbjct: 121 IKRLWEENDDLKPRLDKKTKE 141


>BT011122-1|AAR82789.1|  201|Drosophila melanogaster LD11394p
           protein.
          Length = 201

 Score = 28.3 bits (60), Expect = 7.5
 Identities = 14/28 (50%), Positives = 19/28 (67%)
 Frame = +1

Query: 313 AEAVRQYYAAFPALKKGQESPLQYYLPP 396
           A AV+Q YAA PA+++   +P   YLPP
Sbjct: 56  APAVQQTYAA-PAIQQSYVAPSNEYLPP 82


>AE014298-2000|AAF48343.1|  186|Drosophila melanogaster CG1368-PA
           protein.
          Length = 186

 Score = 28.3 bits (60), Expect = 7.5
 Identities = 14/28 (50%), Positives = 19/28 (67%)
 Frame = +1

Query: 313 AEAVRQYYAAFPALKKGQESPLQYYLPP 396
           A AV+Q YAA PA+++   +P   YLPP
Sbjct: 41  APAVQQTYAA-PAIQQSYVAPSNEYLPP 67


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 27,031,922
Number of Sequences: 53049
Number of extensions: 581369
Number of successful extensions: 1256
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1205
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1256
length of database: 24,988,368
effective HSP length: 81
effective length of database: 20,691,399
effective search space used: 2172596895
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)