Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0641
         (561 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    26   0.23 
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    26   0.23 
AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.              22   4.9  
DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride c...    21   6.4  
AF094822-1|AAC63381.1|  365|Apis mellifera GABA receptor Rdl sub...    21   6.4  
EF625899-1|ABR45906.1| 1010|Apis mellifera high Glx storage prot...    21   8.5  

>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
           AbsCAM-Ig7B protein.
          Length = 1923

 Score = 26.2 bits (55), Expect = 0.23
 Identities = 9/14 (64%), Positives = 12/14 (85%)
 Frame = +3

Query: 312 SRGCTSILRCISSS 353
           SRGCT++LRC+  S
Sbjct: 143 SRGCTAVLRCVVPS 156


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
           AbsCAM-Ig7A protein.
          Length = 1919

 Score = 26.2 bits (55), Expect = 0.23
 Identities = 9/14 (64%), Positives = 12/14 (85%)
 Frame = +3

Query: 312 SRGCTSILRCISSS 353
           SRGCT++LRC+  S
Sbjct: 143 SRGCTAVLRCVVPS 156


>AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.
          Length = 898

 Score = 21.8 bits (44), Expect = 4.9
 Identities = 12/35 (34%), Positives = 16/35 (45%)
 Frame = +1

Query: 430 TAKMQCQLSPSKDWSLRNKKFVGKERPTLTTDKEE 534
           T    CQ S     +      V +E+PT TT+ EE
Sbjct: 469 TGAYMCQASSIGGITRDISSLVVQEQPTPTTESEE 503


>DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 21.4 bits (43), Expect = 6.4
 Identities = 8/19 (42%), Positives = 14/19 (73%)
 Frame = -1

Query: 498 SHKLLIPQAPILGRRQLAL 442
           S+++ +PQ  +LG RQ A+
Sbjct: 180 SNEVSLPQFKVLGHRQRAM 198


>AF094822-1|AAC63381.1|  365|Apis mellifera GABA receptor Rdl
           subunit protein.
          Length = 365

 Score = 21.4 bits (43), Expect = 6.4
 Identities = 8/19 (42%), Positives = 14/19 (73%)
 Frame = -1

Query: 498 SHKLLIPQAPILGRRQLAL 442
           S+++ +PQ  +LG RQ A+
Sbjct: 119 SNEVSLPQFKVLGHRQRAM 137


>EF625899-1|ABR45906.1| 1010|Apis mellifera high Glx storage protein
           protein.
          Length = 1010

 Score = 21.0 bits (42), Expect = 8.5
 Identities = 11/29 (37%), Positives = 13/29 (44%)
 Frame = +1

Query: 307 EQAEAVRQYYAAFPALKKGQESPLQYYLP 393
           +Q +AVR YYA       GQ    Q   P
Sbjct: 709 QQVQAVRNYYANLYTKYHGQYPNTQIQNP 737


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 164,371
Number of Sequences: 438
Number of extensions: 3541
Number of successful extensions: 7
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 16195212
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)