Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0641
         (561 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g56650.1 68416.m06299 thylakoid lumenal 20 kDa protein SP:Q9L...    30   1.2  
At1g07360.1 68414.m00785 zinc finger (CCCH-type) family protein ...    29   2.8  
At2g09865.1 68415.m01022 hypothetical protein                          28   3.7  

>At3g56650.1 68416.m06299 thylakoid lumenal 20 kDa protein
           SP:Q9LXX5; PMID:11719511;  F22K20.16 - Arabidopsis
           thaliana, EMBL:AC002291;
          Length = 262

 Score = 29.9 bits (64), Expect = 1.2
 Identities = 13/42 (30%), Positives = 20/42 (47%)
 Frame = +1

Query: 346 PALKKGQESPLQYYLPPPAWCHKTVTEVTAKMQCQLSPSKDW 471
           PAL+ G   P Q+ L PP W    +  + +   CQ   ++ W
Sbjct: 96  PALRAGNVQPYQFVL-PPNWKQLRIANILSGNYCQPKCAEPW 136


>At1g07360.1 68414.m00785 zinc finger (CCCH-type) family protein /
           RNA recognition motif (RRM)-containing protein similar
           to SP|O59800 Cell cycle control protein cwf5
           {Schizosaccharomyces pombe}, RNA Binding Protein 47
           [Nicotiana plumbaginifolia] GI:9663769; contains Pfam
           profile: PF00076 RNA recognition motif (aka RRM, RBD, or
           RNP domain)
          Length = 481

 Score = 28.7 bits (61), Expect = 2.8
 Identities = 11/24 (45%), Positives = 14/24 (58%)
 Frame = +1

Query: 331 YYAAFPALKKGQESPLQYYLPPPA 402
           Y   +P     Q SP+Q+Y PPPA
Sbjct: 404 YQQQYPPNHHHQPSPMQHYAPPPA 427


>At2g09865.1 68415.m01022 hypothetical protein
          Length = 339

 Score = 28.3 bits (60), Expect = 3.7
 Identities = 13/26 (50%), Positives = 15/26 (57%)
 Frame = +1

Query: 82  TLSRAGCVNTRERAGR*PAGLPRQDH 159
           TLSR GCV +  R  R PA   R +H
Sbjct: 312 TLSRCGCVASTRRRHRSPAPTSRSEH 337


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,861,113
Number of Sequences: 28952
Number of extensions: 268869
Number of successful extensions: 735
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 697
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 735
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1072696904
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)