Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0640
         (532 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC409.07c |wis1|spc2, smf2|MAP kinase kinase Wis1|Schizosaccha...    30   0.25 
SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomy...    28   0.76 
SPAC22E12.09c |krp1|krp|kexin|Schizosaccharomyces pombe|chr 1|||...    27   1.3  
SPAPB24D3.10c |agl1|agl|alpha-glucosidase Agl1|Schizosaccharomyc...    25   7.0  
SPBC12D12.08c |ned8|nedd8, ubl1, SPBC24C6.01c|ubiquitin-like pro...    25   9.3  

>SPBC409.07c |wis1|spc2, smf2|MAP kinase kinase
           Wis1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 605

 Score = 29.9 bits (64), Expect = 0.25
 Identities = 20/60 (33%), Positives = 32/60 (53%), Gaps = 2/60 (3%)
 Frame = +2

Query: 5   IAGWYMAKKISGNA-L*MTAVAPGSMDELYSGGGRCDG-KNEMRYHLEQFLRALPMEHTV 178
           I  +Y A  + G+  + M  +  GSMD+LY+GG + +G      Y + Q L+ L  EH +
Sbjct: 378 IVDFYGAFFVEGSVFICMEYMDAGSMDKLYAGGIKDEGVLARTAYAVVQGLKTLKEEHNI 437


>SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 433

 Score = 28.3 bits (60), Expect = 0.76
 Identities = 12/30 (40%), Positives = 18/30 (60%)
 Frame = +2

Query: 128 RYHLEQFLRALPMEHTVQNAEGTEVPPQTQ 217
           RY LEQ L+  P+EH +   E  + PP+ +
Sbjct: 85  RYGLEQQLKTNPLEHPILITEPFDNPPENR 114


>SPAC22E12.09c |krp1|krp|kexin|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 709

 Score = 27.5 bits (58), Expect = 1.3
 Identities = 12/27 (44%), Positives = 15/27 (55%)
 Frame = +1

Query: 34  LWKRTVNDRSGSR*YG*TLLRWRAVRW 114
           +WK  VNDRSG +  G T   W+   W
Sbjct: 558 VWKLLVNDRSGGKHEG-TFENWQLALW 583


>SPAPB24D3.10c |agl1|agl|alpha-glucosidase Agl1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 969

 Score = 25.0 bits (52), Expect = 7.0
 Identities = 9/24 (37%), Positives = 12/24 (50%)
 Frame = -3

Query: 329 APIYGPGLPNTSFFHLTPYRGGPF 258
           AP+Y P   NT+  +   Y   PF
Sbjct: 131 APLYSPSYNNTNLLYNFSYNANPF 154


>SPBC12D12.08c |ned8|nedd8, ubl1, SPBC24C6.01c|ubiquitin-like
           protein modifier Ned8|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 78

 Score = 24.6 bits (51), Expect = 9.3
 Identities = 10/27 (37%), Positives = 13/27 (48%)
 Frame = +2

Query: 62  VAPGSMDELYSGGGRCDGKNEMRYHLE 142
           + P     +Y+G    D KN   YHLE
Sbjct: 36  IPPSQQRLIYAGKQMADDKNAESYHLE 62


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,701,394
Number of Sequences: 5004
Number of extensions: 62391
Number of successful extensions: 164
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 158
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 164
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 218398248
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)