Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--0640
(532 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_03_0618 - 18071612-18072795,18073007-18073072,18074101-180741... 31 0.58
03_02_0393 - 8075982-8076989 31 0.76
10_02_0201 - 6764313-6765263 30 1.3
11_06_0578 + 25176304-25176388,25176503-25177032,25177267-251779... 29 2.3
04_04_0161 + 23203786-23203848,23204141-23204180,23204865-232050... 29 2.3
01_06_0645 + 30826267-30826307,30826403-30826454,30826580-308266... 29 2.3
10_08_0622 - 19337470-19339008 28 4.1
09_04_0347 + 16887182-16888504 28 4.1
04_03_0319 + 14311530-14312159 28 5.4
01_01_1227 + 9912646-9913056,9913306-9913413,9913517-9913672,991... 28 5.4
09_02_0601 + 11112201-11112386,11112471-11114080,11114345-111145... 27 7.1
07_03_0228 + 15406193-15406356,15406437-15406584 27 9.4
06_01_0749 + 5599238-5600128 27 9.4
01_06_0969 - 33472588-33474480,33475543-33475623,33475692-334757... 27 9.4
01_04_0009 + 15052324-15052439,15052544-15052844 27 9.4
>04_03_0618 -
18071612-18072795,18073007-18073072,18074101-18074175,
18074234-18074963
Length = 684
Score = 31.1 bits (67), Expect = 0.58
Identities = 12/35 (34%), Positives = 21/35 (60%)
Frame = -2
Query: 246 IPFSRIVWNLWVCGGTSVPSAFCTVCSMGSALRNC 142
+PF + LW+CGG +A+C+ S + +R+C
Sbjct: 1 MPFHMLASLLWLCGGI---AAYCSAASAATCVRSC 32
>03_02_0393 - 8075982-8076989
Length = 335
Score = 30.7 bits (66), Expect = 0.76
Identities = 13/46 (28%), Positives = 24/46 (52%)
Frame = +2
Query: 218 RFQTIRENGIIDIRTALLYMESNGRSWYLGAPAHRWEQYSTQGRTC 355
R+ + + + + A LY+++ +Y G A RW Q+S + TC
Sbjct: 169 RYAVLEASTVSGVLHASLYLDAVVLPYYTGLEALRWSQFSGECATC 214
>10_02_0201 - 6764313-6765263
Length = 316
Score = 29.9 bits (64), Expect = 1.3
Identities = 13/46 (28%), Positives = 24/46 (52%)
Frame = +2
Query: 218 RFQTIRENGIIDIRTALLYMESNGRSWYLGAPAHRWEQYSTQGRTC 355
R+ + + + I A LY+++ +Y G A RW ++S + TC
Sbjct: 148 RYAVLEASTVSGILHASLYLDAVVLPYYTGTDALRWSRFSGECATC 193
>11_06_0578 +
25176304-25176388,25176503-25177032,25177267-25177997,
25178122-25178172,25178562-25178813,25178894-25179004,
25179102-25179183,25179460-25179489
Length = 623
Score = 29.1 bits (62), Expect = 2.3
Identities = 20/59 (33%), Positives = 26/59 (44%), Gaps = 3/59 (5%)
Frame = +1
Query: 106 VRW*KRDAVSSRTIP---QSTPHGTYGTKCRGNRSPSADPEVPNDP*EWDYRHPNGPPL 273
+ W +RD + + IP STP + K PS PE P+ RHP PPL
Sbjct: 333 ILWHRRDIILTAAIPAAGSSTPSSSQARKASAPAPPSP-PEPPSP------RHPASPPL 384
>04_04_0161 +
23203786-23203848,23204141-23204180,23204865-23205016,
23205270-23205406,23206356-23206396,23206500-23207098,
23207599-23207679,23208146-23208208,23209141-23209197
Length = 410
Score = 29.1 bits (62), Expect = 2.3
Identities = 11/28 (39%), Positives = 20/28 (71%)
Frame = +3
Query: 129 GIISNNSSEHSPWNIRYKMQREPKSLRR 212
G+ SN +E + ++R K+ R+PK++RR
Sbjct: 161 GLSSNGGAEQNGVDLREKLSRKPKNIRR 188
>01_06_0645 +
30826267-30826307,30826403-30826454,30826580-30826659,
30826804-30826882,30826962-30827045,30827131-30827276,
30827362-30827628,30827825-30827907,30828162-30828271,
30828544-30829159,30829471-30829620,30829700-30829800
Length = 602
Score = 29.1 bits (62), Expect = 2.3
Identities = 18/40 (45%), Positives = 23/40 (57%), Gaps = 1/40 (2%)
Frame = +3
Query: 222 SKRSVRMGLST-SERPSSIWSQMEEAGIWEPRPIDGSSTP 338
SK+S R G ST SE PSS + E+ + PR S+TP
Sbjct: 241 SKKSERHGRSTTSEAPSSKKGENEDDDDFNPRGFSTSTTP 280
>10_08_0622 - 19337470-19339008
Length = 512
Score = 28.3 bits (60), Expect = 4.1
Identities = 18/49 (36%), Positives = 25/49 (51%), Gaps = 3/49 (6%)
Frame = +2
Query: 95 GGGR--CDGKNEMRYHLEQFLRALPMEHTVQNAEGTEVP-PQTQRFQTI 232
G GR C G N HLE F+ ++ ME + EG EV + + F T+
Sbjct: 450 GVGRRICAGLNIAMLHLEYFVGSMVMEFEWKEVEGHEVEFAEKREFTTV 498
>09_04_0347 + 16887182-16888504
Length = 440
Score = 28.3 bits (60), Expect = 4.1
Identities = 14/34 (41%), Positives = 22/34 (64%)
Frame = +3
Query: 192 EPKSLRRPRGSKRSVRMGLSTSERPSSIWSQMEE 293
EP++ +RPR + +V S+RPS +WSQ +E
Sbjct: 171 EPRA-KRPRSA--AVASSAEHSKRPSRVWSQADE 201
>04_03_0319 + 14311530-14312159
Length = 209
Score = 27.9 bits (59), Expect = 5.4
Identities = 12/27 (44%), Positives = 18/27 (66%)
Frame = -2
Query: 489 VDI*RDVQFRSHLEGKVKLVSKMLGVF 409
+D+ R V FR HL+G +K VS+ +F
Sbjct: 13 IDVKRRVTFRKHLKGLMKKVSEFATLF 39
>01_01_1227 +
9912646-9913056,9913306-9913413,9913517-9913672,
9914110-9914325,9914436-9914645,9914722-9914859,
9915076-9915177,9915508-9915603
Length = 478
Score = 27.9 bits (59), Expect = 5.4
Identities = 15/38 (39%), Positives = 18/38 (47%)
Frame = -3
Query: 488 STFREMSSFGVIWKVKSSWCPKCWESSTE*SGISRMDK 375
S F S GV W S+W K + S E GIS +K
Sbjct: 278 SVFYSFGSLGVFWF--STWASKAYSSPLEDPGISAEEK 313
>09_02_0601 +
11112201-11112386,11112471-11114080,11114345-11114579,
11115233-11115358
Length = 718
Score = 27.5 bits (58), Expect = 7.1
Identities = 16/55 (29%), Positives = 25/55 (45%)
Frame = +1
Query: 106 VRW*KRDAVSSRTIPQSTPHGTYGTKCRGNRSPSADPEVPNDP*EWDYRHPNGPP 270
+ W +RD + S +P + G+ T +A P P+ P RHP+ PP
Sbjct: 379 ILWHRRDIILSAAVPAA---GS-STPSSSQAMTAAAPAPPSPPEPPSPRHPSSPP 429
>07_03_0228 + 15406193-15406356,15406437-15406584
Length = 103
Score = 27.1 bits (57), Expect = 9.4
Identities = 12/29 (41%), Positives = 15/29 (51%)
Frame = +1
Query: 22 GKKDLWKRTVNDRSGSR*YG*TLLRWRAV 108
G W+RTV R GS G T+ +W V
Sbjct: 24 GSTGRWRRTVAPREGSGTAGSTMTKWHRV 52
>06_01_0749 + 5599238-5600128
Length = 296
Score = 27.1 bits (57), Expect = 9.4
Identities = 12/38 (31%), Positives = 19/38 (50%)
Frame = +3
Query: 189 REPKSLRRPRGSKRSVRMGLSTSERPSSIWSQMEEAGI 302
R+ + RRPR +V STS P +W+ +E +
Sbjct: 68 RKSERRRRPRSLAMAVHGHASTSGGPGLVWNDADEVAL 105
>01_06_0969 -
33472588-33474480,33475543-33475623,33475692-33475740,
33475866-33476281,33477208-33477447
Length = 892
Score = 27.1 bits (57), Expect = 9.4
Identities = 11/40 (27%), Positives = 22/40 (55%)
Frame = -1
Query: 199 FGSLCILYRMFHGECSEELFEMIPHLVFTIAPPATGVEFI 80
F +C+ YR+F G C ++ +++P +V A V+ +
Sbjct: 222 FVMICLFYRLFEGMC-QKPDKLLPRIVTPFLQNARNVDIV 260
>01_04_0009 + 15052324-15052439,15052544-15052844
Length = 138
Score = 27.1 bits (57), Expect = 9.4
Identities = 9/20 (45%), Positives = 11/20 (55%)
Frame = -3
Query: 461 GVIWKVKSSWCPKCWESSTE 402
G +WK K SWC K T+
Sbjct: 114 GNVWKAKCSWCQKLLSGETK 133
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,269,184
Number of Sequences: 37544
Number of extensions: 439025
Number of successful extensions: 1201
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 1164
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1201
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1178343540
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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