Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--0640
(532 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z50874-7|CAA90767.1| 375|Caenorhabditis elegans Hypothetical pr... 31 0.52
Z69902-10|CAI59119.1| 4053|Caenorhabditis elegans Hypothetical p... 29 1.6
Z69902-9|CAH10779.1| 4061|Caenorhabditis elegans Hypothetical pr... 29 1.6
Z69902-8|CAA93765.2| 4064|Caenorhabditis elegans Hypothetical pr... 29 1.6
AY551966-1|AAS65430.1| 4064|Caenorhabditis elegans TRR-1 protein. 29 1.6
AF067937-2|AAF99916.1| 381|Caenorhabditis elegans Choline kinas... 29 2.1
L25599-3|ABN43087.1| 570|Caenorhabditis elegans Hypothetical pr... 29 2.7
U53180-5|AAA96287.3| 295|Caenorhabditis elegans Hypothetical pr... 27 6.3
AL117195-31|CAN99709.1| 1459|Caenorhabditis elegans Hypothetical... 27 6.3
AL117195-30|CAB60772.3| 1456|Caenorhabditis elegans Hypothetical... 27 6.3
Z83240-3|CAB05813.2| 483|Caenorhabditis elegans Hypothetical pr... 27 8.4
Z68010-2|CAA92010.2| 433|Caenorhabditis elegans Hypothetical pr... 27 8.4
Z46241-4|CAA86318.1| 837|Caenorhabditis elegans Hypothetical pr... 27 8.4
Z37983-2|CAA86055.1| 585|Caenorhabditis elegans Hypothetical pr... 27 8.4
Z29095-5|CAA82350.1| 289|Caenorhabditis elegans Hypothetical pr... 27 8.4
AJ005867-1|CAA06744.1| 289|Caenorhabditis elegans Sqv-3 protein... 27 8.4
AF003388-1|AAW88390.1| 2779|Caenorhabditis elegans Hypothetical ... 27 8.4
AB236333-1|BAE45265.1| 433|Caenorhabditis elegans MBlk-1 Relate... 27 8.4
>Z50874-7|CAA90767.1| 375|Caenorhabditis elegans Hypothetical
protein R10E4.6 protein.
Length = 375
Score = 31.1 bits (67), Expect = 0.52
Identities = 15/49 (30%), Positives = 26/49 (53%)
Frame = +2
Query: 53 MTAVAPGSMDELYSGGGRCDGKNEMRYHLEQFLRALPMEHTVQNAEGTE 199
MT ++ +D G R D +NE+R+HL + ++ + QN EG +
Sbjct: 70 MTPISNFIIDSQRKEGVRYDDQNELRFHLHEVVKEAFSDAIHQNLEGID 118
>Z69902-10|CAI59119.1| 4053|Caenorhabditis elegans Hypothetical
protein C47D12.1c protein.
Length = 4053
Score = 29.5 bits (63), Expect = 1.6
Identities = 13/28 (46%), Positives = 19/28 (67%)
Frame = +1
Query: 403 SVEDSQHFGHQLDFTFQMTPKLDISLNV 486
S+ D QHFGH++ F++TP L I + V
Sbjct: 3925 SLHDIQHFGHEV--PFRLTPNLSILVGV 3950
>Z69902-9|CAH10779.1| 4061|Caenorhabditis elegans Hypothetical protein
C47D12.1b protein.
Length = 4061
Score = 29.5 bits (63), Expect = 1.6
Identities = 13/28 (46%), Positives = 19/28 (67%)
Frame = +1
Query: 403 SVEDSQHFGHQLDFTFQMTPKLDISLNV 486
S+ D QHFGH++ F++TP L I + V
Sbjct: 3936 SLHDIQHFGHEV--PFRLTPNLSILVGV 3961
>Z69902-8|CAA93765.2| 4064|Caenorhabditis elegans Hypothetical protein
C47D12.1a protein.
Length = 4064
Score = 29.5 bits (63), Expect = 1.6
Identities = 13/28 (46%), Positives = 19/28 (67%)
Frame = +1
Query: 403 SVEDSQHFGHQLDFTFQMTPKLDISLNV 486
S+ D QHFGH++ F++TP L I + V
Sbjct: 3936 SLHDIQHFGHEV--PFRLTPNLSILVGV 3961
>AY551966-1|AAS65430.1| 4064|Caenorhabditis elegans TRR-1 protein.
Length = 4064
Score = 29.5 bits (63), Expect = 1.6
Identities = 13/28 (46%), Positives = 19/28 (67%)
Frame = +1
Query: 403 SVEDSQHFGHQLDFTFQMTPKLDISLNV 486
S+ D QHFGH++ F++TP L I + V
Sbjct: 3936 SLHDIQHFGHEV--PFRLTPNLSILVGV 3961
>AF067937-2|AAF99916.1| 381|Caenorhabditis elegans Choline kinase b
protein 4 protein.
Length = 381
Score = 29.1 bits (62), Expect = 2.1
Identities = 16/51 (31%), Positives = 23/51 (45%)
Frame = -1
Query: 517 NFKEYWDIWGRHLERCPVSESFGR*SQVGVQNVGSLQQSEAVFHAWTKTFD 365
N + Y + G+ L+ CP S + S V ++Q A F W K FD
Sbjct: 164 NLEGYKALGGKVLKMCPHSVKYD--SMPSELTVEQIEQEIATFERWCKVFD 212
>L25599-3|ABN43087.1| 570|Caenorhabditis elegans Hypothetical
protein F54H12.8 protein.
Length = 570
Score = 28.7 bits (61), Expect = 2.7
Identities = 24/85 (28%), Positives = 38/85 (44%), Gaps = 1/85 (1%)
Frame = +1
Query: 142 TIPQSTPHGTYGTKCRGNRSPSADPEVPNDP*EWDYRHPNGPPLYGVKWKKLVFGSPGP* 321
TI + +Y S ++DP +PN + R PN PP W+ +P P
Sbjct: 87 TIDPGSQSSSYSGNSLTASSTTSDPSIPNPTRKRITRQPNYPP-----WQPHQPSNPNPP 141
Query: 322 MGAVLHSRPDL-CFINQKSLSMREI 393
++ + PD CFI++K + EI
Sbjct: 142 PFSM--NVPDFHCFIDEKMRAEVEI 164
>U53180-5|AAA96287.3| 295|Caenorhabditis elegans Hypothetical
protein D1014.3 protein.
Length = 295
Score = 27.5 bits (58), Expect = 6.3
Identities = 10/29 (34%), Positives = 17/29 (58%)
Frame = +3
Query: 444 YLPNDSETGHLSKCRPQISQYSLKLQKYS 530
Y + + SKC +++ YS +L+KYS
Sbjct: 150 YYKGEEQKSSASKCLVKVAMYSAELEKYS 178
>AL117195-31|CAN99709.1| 1459|Caenorhabditis elegans Hypothetical
protein Y57A10A.18b protein.
Length = 1459
Score = 27.5 bits (58), Expect = 6.3
Identities = 14/41 (34%), Positives = 18/41 (43%)
Frame = +3
Query: 195 PKSLRRPRGSKRSVRMGLSTSERPSSIWSQMEEAGIWEPRP 317
P R PRG M S+ PSS+WS + + RP
Sbjct: 1215 PSRARVPRGPSPPTAMKPGGSDAPSSLWSWNTIGNLGDLRP 1255
>AL117195-30|CAB60772.3| 1456|Caenorhabditis elegans Hypothetical
protein Y57A10A.18a protein.
Length = 1456
Score = 27.5 bits (58), Expect = 6.3
Identities = 14/41 (34%), Positives = 18/41 (43%)
Frame = +3
Query: 195 PKSLRRPRGSKRSVRMGLSTSERPSSIWSQMEEAGIWEPRP 317
P R PRG M S+ PSS+WS + + RP
Sbjct: 1215 PSRARVPRGPSPPTAMKPGGSDAPSSLWSWNTIGNLGDLRP 1255
>Z83240-3|CAB05813.2| 483|Caenorhabditis elegans Hypothetical
protein T23H4.1 protein.
Length = 483
Score = 27.1 bits (57), Expect = 8.4
Identities = 12/29 (41%), Positives = 18/29 (62%), Gaps = 3/29 (10%)
Frame = -3
Query: 101 RHRSRV---HPYYLEPLRSFTVRFQRSFL 24
+HR R+ HPY+ + R F VR+ S+L
Sbjct: 192 KHRFRIGEKHPYHHKVFRIFNVRYYESYL 220
>Z68010-2|CAA92010.2| 433|Caenorhabditis elegans Hypothetical
protein T01C1.2 protein.
Length = 433
Score = 27.1 bits (57), Expect = 8.4
Identities = 13/45 (28%), Positives = 20/45 (44%)
Frame = +3
Query: 57 PQWLQVVWMNSTPVAGGAMVKTRCGIISNNSSEHSPWNIRYKMQR 191
P+WL+ +W N G + I +N H+P I K Q+
Sbjct: 281 PKWLESIWQNLFKTQGNVVPVDSANI--SNVDTHTPTPISEKSQK 323
>Z46241-4|CAA86318.1| 837|Caenorhabditis elegans Hypothetical
protein C38D4.5 protein.
Length = 837
Score = 27.1 bits (57), Expect = 8.4
Identities = 14/44 (31%), Positives = 22/44 (50%)
Frame = +3
Query: 201 SLRRPRGSKRSVRMGLSTSERPSSIWSQMEEAGIWEPRPIDGSS 332
S PR SK ++ L R ++E GI++P P+ GS+
Sbjct: 568 STDEPRPSKETIIEKLRRFFRTRPTVESLKEKGIYKPEPVFGST 611
>Z37983-2|CAA86055.1| 585|Caenorhabditis elegans Hypothetical
protein B0393.2 protein.
Length = 585
Score = 27.1 bits (57), Expect = 8.4
Identities = 9/18 (50%), Positives = 13/18 (72%)
Frame = +1
Query: 265 PPLYGVKWKKLVFGSPGP 318
P LYG++W +L+FG P
Sbjct: 290 PQLYGIRWLRLLFGRELP 307
>Z29095-5|CAA82350.1| 289|Caenorhabditis elegans Hypothetical
protein R10E11.4 protein.
Length = 289
Score = 27.1 bits (57), Expect = 8.4
Identities = 12/45 (26%), Positives = 26/45 (57%)
Frame = -1
Query: 256 DVDNPILTDRLEPLGLRRDFGSLCILYRMFHGECSEELFEMIPHL 122
++ ++TD ++P L+ + LC++ + + + EEL E PH+
Sbjct: 31 EITRDLMTDYVDPRPLQTSYHKLCVI--VPYRDRLEELREFSPHM 73
>AJ005867-1|CAA06744.1| 289|Caenorhabditis elegans Sqv-3 protein
protein.
Length = 289
Score = 27.1 bits (57), Expect = 8.4
Identities = 12/45 (26%), Positives = 26/45 (57%)
Frame = -1
Query: 256 DVDNPILTDRLEPLGLRRDFGSLCILYRMFHGECSEELFEMIPHL 122
++ ++TD ++P L+ + LC++ + + + EEL E PH+
Sbjct: 31 EITRDLMTDYVDPRPLQTSYHKLCVI--VPYRDRLEELREFSPHM 73
>AF003388-1|AAW88390.1| 2779|Caenorhabditis elegans Hypothetical
protein R10F2.1 protein.
Length = 2779
Score = 27.1 bits (57), Expect = 8.4
Identities = 18/61 (29%), Positives = 32/61 (52%), Gaps = 4/61 (6%)
Frame = +3
Query: 36 LETHCE*PQWLQVVWM----NSTPVAGGAMVKTRCGIISNNSSEHSPWNIRYKMQREPKS 203
L+T + PQ+ + +W TP+ G +VK +++NNS + IRY +Q + +
Sbjct: 531 LDTESKPPQFEKALWQVEIPEDTPI-GTCLVK----VVANNSQCGNSKRIRYSLQNQDEH 585
Query: 204 L 206
L
Sbjct: 586 L 586
>AB236333-1|BAE45265.1| 433|Caenorhabditis elegans MBlk-1 Related
factor-1 protein.
Length = 433
Score = 27.1 bits (57), Expect = 8.4
Identities = 13/45 (28%), Positives = 20/45 (44%)
Frame = +3
Query: 57 PQWLQVVWMNSTPVAGGAMVKTRCGIISNNSSEHSPWNIRYKMQR 191
P+WL+ +W N G + I +N H+P I K Q+
Sbjct: 281 PKWLESIWQNLFKTQGNVVPVDSANI--SNVDTHTPTPISEKSQK 323
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,966,345
Number of Sequences: 27780
Number of extensions: 354562
Number of successful extensions: 980
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 933
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 980
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1049512662
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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