Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0640
         (532 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    25   0.64 
EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.     21   5.9  
DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.               21   5.9  
AB253416-1|BAE86927.1|  580|Apis mellifera alpha-glucosidase pro...    21   7.9  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             21   7.9  

>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
           protein.
          Length = 1770

 Score = 24.6 bits (51), Expect = 0.64
 Identities = 18/49 (36%), Positives = 24/49 (48%), Gaps = 2/49 (4%)
 Frame = +3

Query: 231 SVRMGLSTSERPSSIWSQMEEAGIWEPRPI--DGSSTPLKAGLVLYKSK 371
           ++R  +S+S   SSI S  EE   W+P+P   D     L    V YK K
Sbjct: 366 NLRTDISSSS--SSI-SSSEENDFWQPKPTLEDAPQNSLLPNFVGYKGK 411


>EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.
          Length = 570

 Score = 21.4 bits (43), Expect = 5.9
 Identities = 7/17 (41%), Positives = 9/17 (52%)
 Frame = +3

Query: 156 HSPWNIRYKMQREPKSL 206
           H PWN    +QR  K +
Sbjct: 462 HEPWNAPLNVQRAAKCI 478


>DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.
          Length = 828

 Score = 21.4 bits (43), Expect = 5.9
 Identities = 5/11 (45%), Positives = 8/11 (72%)
 Frame = -2

Query: 243 PFSRIVWNLWV 211
           P+  +VWN W+
Sbjct: 467 PYDHLVWNSWM 477


>AB253416-1|BAE86927.1|  580|Apis mellifera alpha-glucosidase
           protein.
          Length = 580

 Score = 21.0 bits (42), Expect = 7.9
 Identities = 6/11 (54%), Positives = 7/11 (63%)
 Frame = -1

Query: 523 FCNFKEYWDIW 491
           F N+K YW  W
Sbjct: 564 FTNYKLYWRYW 574


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 21.0 bits (42), Expect = 7.9
 Identities = 8/14 (57%), Positives = 9/14 (64%)
 Frame = +2

Query: 170 HTVQNAEGTEVPPQ 211
           +T QNA  T  PPQ
Sbjct: 679 NTTQNASATTPPPQ 692


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 179,950
Number of Sequences: 438
Number of extensions: 4440
Number of successful extensions: 7
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 14968302
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)