Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0640
         (532 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g36550.1 68417.m05190 U-box domain-containing protein low sim...    29   1.5  
At3g16530.1 68416.m02111 legume lectin family protein contains P...    29   1.5  
At5g18260.1 68418.m02146 expressed protein                             29   2.6  
At1g25570.1 68414.m03174 leucine-rich repeat protein-related  co...    29   2.6  
At4g12590.1 68417.m01985 expressed protein contains Pfam PF05863...    28   3.4  
At5g49920.1 68418.m06181 octicosapeptide/Phox/Bem1p (PB1) domain...    28   4.5  
At2g47650.1 68415.m05950 NAD-dependent epimerase/dehydratase fam...    28   4.5  
At2g24650.1 68415.m02944 transcriptional factor B3 family protei...    27   6.0  
At3g15356.1 68416.m01940 legume lectin family protein contains P...    27   7.9  
At2g47090.1 68415.m05882 zinc finger (C2H2 type) family protein ...    27   7.9  
At1g20890.1 68414.m02616 expressed protein Location of ESTs OAO2...    27   7.9  

>At4g36550.1 68417.m05190 U-box domain-containing protein low
           similarity to immediate-early fungal elicitor protein
           CMPG1 [Petroselinum crispum] GI:14582200; contains Pfam
           profile PF04564: U-box domain
          Length = 577

 Score = 29.5 bits (63), Expect = 1.5
 Identities = 17/47 (36%), Positives = 24/47 (51%)
 Frame = -3

Query: 191 PLHFVPYVPWGVL*GIVRDDTASRFYHRTARHRSRVHPYYLEPLRSF 51
           PL  +  +PW     +V +D  SRF H T   RS     +LEPL ++
Sbjct: 239 PLCGLTNLPWDAQIKVV-EDVRSRFEHSTRAFRSMSPSKFLEPLITY 284


>At3g16530.1 68416.m02111 legume lectin family protein contains Pfam
           domain, PF00139: Legume lectins beta domain
          Length = 276

 Score = 29.5 bits (63), Expect = 1.5
 Identities = 14/47 (29%), Positives = 24/47 (51%)
 Frame = +1

Query: 325 GAVLHSRPDLCFINQKSLSMREIPLHSVEDSQHFGHQLDFTFQMTPK 465
           GA+  +R +  F + + L + +IP      S  F  +  FTF +TP+
Sbjct: 51  GALSMTRDENPFSHGQGLYINQIPFKPSNTSSPFSFETSFTFSITPR 97


>At5g18260.1 68418.m02146 expressed protein
          Length = 320

 Score = 28.7 bits (61), Expect = 2.6
 Identities = 19/47 (40%), Positives = 23/47 (48%), Gaps = 5/47 (10%)
 Frame = +3

Query: 66  LQVVWMNSTPVAG-----GAMVKTRCGIISNNSSEHSPWNIRYKMQR 191
           L V   N T VA      G+M   RCGI     S+ SPW+  YK+ R
Sbjct: 167 LDVERSNDTEVANPRSEQGSMTHQRCGICKKLLSQKSPWS-SYKILR 212


>At1g25570.1 68414.m03174 leucine-rich repeat protein-related
           contains leucine rich-repeat (LRR) domains Pfam:PF00560,
           INTERPRO:IPR001611; contains some similarity to light
           repressible receptor protein kinase [Arabidopsis
           thaliana] gi|1321686|emb|CAA66376
          Length = 628

 Score = 28.7 bits (61), Expect = 2.6
 Identities = 14/45 (31%), Positives = 22/45 (48%), Gaps = 2/45 (4%)
 Frame = +2

Query: 80  DELYSGGGRCDGKNEMRYHL--EQFLRALPMEHTVQNAEGTEVPP 208
           D+ YSGG        +R+HL  E+ +R  P+    +N     +PP
Sbjct: 51  DQFYSGGSTAVVSEPLRFHLIAEKTIRYFPLSFGKKNCYVVPLPP 95


>At4g12590.1 68417.m01985 expressed protein contains Pfam PF05863:
           Eukaryotic protein of unknown function (DUF850)
          Length = 246

 Score = 28.3 bits (60), Expect = 3.4
 Identities = 16/33 (48%), Positives = 23/33 (69%), Gaps = 1/33 (3%)
 Frame = +2

Query: 206 PQTQRFQTIRENGIIDIRTA-LLYMESNGRSWY 301
           P TQRF+++ +NG ID+ T  + Y+ S  RSWY
Sbjct: 144 PLTQRFRSMLQNG-IDLSTVDVSYVSS--RSWY 173


>At5g49920.1 68418.m06181 octicosapeptide/Phox/Bem1p (PB1)
           domain-containing protein   contains Pfam profile
           PF00564: PB1 domain
          Length = 288

 Score = 27.9 bits (59), Expect = 4.5
 Identities = 14/34 (41%), Positives = 17/34 (50%)
 Frame = +1

Query: 337 HSRPDLCFINQKSLSMREIPLHSVEDSQHFGHQL 438
           H  P+  F N   LS R  P+H V  S +  HQL
Sbjct: 173 HEPPETSFQNNYQLS-RLYPMHRVHSSPNISHQL 205


>At2g47650.1 68415.m05950 NAD-dependent epimerase/dehydratase family
           protein similar to UDP-glucuronic acid decarboxylase
           Uxs1p from Filobasidiella neoformans GI:14318327;
           contains Pfam profile PF01370 NAD dependent
           epimerase/dehydratase family; contains non-consensus AT
           donor splice site at exon 1 and  non-consensus AC
           acceptor splice site at exon 2
          Length = 443

 Score = 27.9 bits (59), Expect = 4.5
 Identities = 15/49 (30%), Positives = 26/49 (53%)
 Frame = -3

Query: 158 VL*GIVRDDTASRFYHRTARHRSRVHPYYLEPLRSFTVRFQRSFLPCTI 12
           VL GI         + +++ H+    PY ++PL  + +R + S+LP TI
Sbjct: 47  VLVGIAIATLGFTIFSKSSNHQPI--PYDVDPLSGYGMRSESSYLPATI 93


>At2g24650.1 68415.m02944 transcriptional factor B3 family protein low
            similarity to reproductive meristem gene 1 from [Brassica
            oleracea var. botrytis] GI:3170424, [Arabidopsis
            thaliana] GI:13604227; contains Pfam profile PF02362: B3
            DNA binding domain
          Length = 1440

 Score = 27.5 bits (58), Expect = 6.0
 Identities = 15/42 (35%), Positives = 21/42 (50%), Gaps = 7/42 (16%)
 Frame = +2

Query: 200  VPPQTQRFQTI-------RENGIIDIRTALLYMESNGRSWYL 304
            V P T R+ T+       RENG+   R  ++ M   G+SW L
Sbjct: 1191 VAPSTLRYDTLYLPKRFMRENGVDKRRGEMILMNEKGKSWTL 1232


>At3g15356.1 68416.m01940 legume lectin family protein contains Pfam
           domain, PF00139: Legume lectins beta domain
          Length = 271

 Score = 27.1 bits (57), Expect = 7.9
 Identities = 14/47 (29%), Positives = 23/47 (48%)
 Frame = +1

Query: 325 GAVLHSRPDLCFINQKSLSMREIPLHSVEDSQHFGHQLDFTFQMTPK 465
           GA+  +R +  F + + L +  I   S   S  F  +  FTF +TP+
Sbjct: 51  GALSMTRDETPFSHGQGLYINPIQFKSSNTSSPFDFKTSFTFSITPR 97


>At2g47090.1 68415.m05882 zinc finger (C2H2 type) family protein
           contains Prosite PS00028: Zinc finger, C2H2 type, domain
          Length = 745

 Score = 27.1 bits (57), Expect = 7.9
 Identities = 13/34 (38%), Positives = 17/34 (50%)
 Frame = +1

Query: 193 NRSPSADPEVPNDP*EWDYRHPNGPPLYGVKWKK 294
           N +P  +PE  ND  +     P G PL G  WK+
Sbjct: 706 NSNPEPEPEPKNDNSKRSQNSPGGLPLRGA-WKR 738


>At1g20890.1 68414.m02616 expressed protein Location of ESTs OAO242
           5' end, gb|Z30466 and OAO242 3' end, gb|Z30467
          Length = 197

 Score = 27.1 bits (57), Expect = 7.9
 Identities = 11/26 (42%), Positives = 17/26 (65%)
 Frame = +1

Query: 1   FHSRMVHGKKDLWKRTVNDRSGSR*Y 78
           F  + ++  K+LWK T+  +SGSR Y
Sbjct: 31  FGGKTLYAGKELWKETLPLKSGSRVY 56


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,327,082
Number of Sequences: 28952
Number of extensions: 336921
Number of successful extensions: 933
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 902
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 933
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 987020800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)