Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--0639
(481 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_36446| Best HMM Match : GTP_CDC (HMM E-Value=0) 92 2e-19
SB_6352| Best HMM Match : GTP_CDC (HMM E-Value=1.49939e-42) 88 4e-18
SB_52502| Best HMM Match : GTP_CDC (HMM E-Value=1.9e-06) 61 5e-10
SB_31708| Best HMM Match : GTP_CDC (HMM E-Value=0) 46 2e-05
SB_53183| Best HMM Match : Ras (HMM E-Value=0) 33 0.092
SB_29253| Best HMM Match : Ras (HMM E-Value=2.8e-05) 28 4.6
SB_22546| Best HMM Match : ABC_tran (HMM E-Value=0) 28 4.6
SB_13045| Best HMM Match : Ras (HMM E-Value=0) 27 6.1
SB_4971| Best HMM Match : Ras (HMM E-Value=0) 27 6.1
SB_50995| Best HMM Match : Foamy_BEL (HMM E-Value=2.4) 27 8.0
SB_8853| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.0
SB_21081| Best HMM Match : Pro_isomerase (HMM E-Value=0.11) 27 8.0
>SB_36446| Best HMM Match : GTP_CDC (HMM E-Value=0)
Length = 384
Score = 91.9 bits (218), Expect = 2e-19
Identities = 51/145 (35%), Positives = 86/145 (59%), Gaps = 5/145 (3%)
Frame = +3
Query: 54 LSGHVGFDSLPDQLVSKSIQNGFVFNILCIGETGLGKSTLMDSLFNTNFESSPSPHNL-- 227
+ G+VGF +LP+Q+ KS++ GF F ++ +GE+GLGKSTL++SLF T+ + S ++
Sbjct: 1 MEGYVGFANLPNQVFRKSVKKGFEFTVMVVGESGLGKSTLLNSLFLTDLYTPSSYPSIKE 60
Query: 228 ---PTVKLKAHTMSWRRAMSG*S*QSVTLSVTGDQXNKEYSFKAVVDYIDAQFQAYLQ*E 398
TV++K T+ + V GD + +K V+ YID++F+ +L E
Sbjct: 61 KLNKTVEVKPCTVELKEGGVRLRLTVVDTPGFGDAVDNTDCWKPVIKYIDSKFEEHLNAE 120
Query: 399 LKIKHSLSNYHNNKLHVCLYFIYPT 473
+++ S + +N++H CLYFI PT
Sbjct: 121 SRVQR--SPFPDNRVHCCLYFISPT 143
>SB_6352| Best HMM Match : GTP_CDC (HMM E-Value=1.49939e-42)
Length = 275
Score = 87.8 bits (208), Expect = 4e-18
Identities = 50/147 (34%), Positives = 86/147 (58%), Gaps = 7/147 (4%)
Frame = +3
Query: 54 LSGHVGFDSLPDQLVSKSIQNGFVFNILCIGETGLGKSTLMDSLFNTNFESSPSPHNLPT 233
L G+VGFD++ +Q+ KS++ GF FN++ +G +GLGKST++++LF S P+ PT
Sbjct: 91 LDGYVGFDTVQEQIRRKSLKRGFEFNLMVVGASGLGKSTMVNTLFKGKL-SRPTSTGKPT 149
Query: 234 VKLKAHTMSWRRAMSG*S*QSVTLSVT-------GDQXNKEYSFKAVVDYIDAQFQAYLQ 392
+ K T+ + + V L +T GDQ N + ++ ++DYI++Q+ +L
Sbjct: 150 IIPK--TVDVKSVSHVIEEKGVRLKLTITDTPGFGDQINNDKCWEPIMDYINSQYDKFLT 207
Query: 393 *ELKIKHSLSNYHNNKLHVCLYFIYPT 473
E+ I+ ++++H CLYFI PT
Sbjct: 208 EEVTIERK-PRIPDSRVHCCLYFIAPT 233
>SB_52502| Best HMM Match : GTP_CDC (HMM E-Value=1.9e-06)
Length = 101
Score = 60.9 bits (141), Expect = 5e-10
Identities = 26/51 (50%), Positives = 40/51 (78%)
Frame = +3
Query: 54 LSGHVGFDSLPDQLVSKSIQNGFVFNILCIGETGLGKSTLMDSLFNTNFES 206
++ +VGF +LP+Q+ KS++ GF F ++ +GE+GLGKSTL+DSLF T+ S
Sbjct: 1 MANYVGFANLPNQVHRKSVKKGFEFTLMVVGESGLGKSTLIDSLFLTDLYS 51
Score = 29.1 bits (62), Expect = 2.0
Identities = 12/25 (48%), Positives = 17/25 (68%)
Frame = +2
Query: 239 VEGSHYELEESNVRLKLTICDTVSY 313
+E S E+EE V+L+LT+ DT Y
Sbjct: 68 IETSTVEIEERGVKLRLTVVDTPGY 92
>SB_31708| Best HMM Match : GTP_CDC (HMM E-Value=0)
Length = 272
Score = 46.0 bits (104), Expect = 2e-05
Identities = 21/51 (41%), Positives = 32/51 (62%)
Frame = +3
Query: 318 DQXNKEYSFKAVVDYIDAQFQAYLQ*ELKIKHSLSNYHNNKLHVCLYFIYP 470
D + YS++ +VDYID QF++YL+ E + N + ++H CLYFI P
Sbjct: 65 DAVDNTYSWEPIVDYIDHQFESYLRDESGLNR--RNIMDTRVHCCLYFINP 113
Score = 28.7 bits (61), Expect = 2.6
Identities = 11/25 (44%), Positives = 17/25 (68%)
Frame = +2
Query: 239 VEGSHYELEESNVRLKLTICDTVSY 313
+E + E+EE VRL+LT+ DT +
Sbjct: 39 IESNTVEIEEKGVRLRLTVVDTPGF 63
>SB_53183| Best HMM Match : Ras (HMM E-Value=0)
Length = 834
Score = 33.5 bits (73), Expect = 0.092
Identities = 19/56 (33%), Positives = 34/56 (60%), Gaps = 4/56 (7%)
Frame = +3
Query: 120 FVFNILCIGETGLGKSTLM----DSLFNTNFESSPSPHNLPTVKLKAHTMSWRRAM 275
++F +L IG++G+GK+ ++ D FNT F S+ L T+ AHT+++ R +
Sbjct: 8 YLFKLLLIGDSGVGKTCILFRFSDDAFNTTFISTIENVLLNTL---AHTLNFERTL 60
>SB_29253| Best HMM Match : Ras (HMM E-Value=2.8e-05)
Length = 68
Score = 27.9 bits (59), Expect = 4.6
Identities = 10/34 (29%), Positives = 20/34 (58%)
Frame = +3
Query: 99 SKSIQNGFVFNILCIGETGLGKSTLMDSLFNTNF 200
+K + ++F ++ IG++G+GKS L+ F
Sbjct: 3 TKDDEYDYLFKVVLIGDSGVGKSNLLSRFTRNEF 36
>SB_22546| Best HMM Match : ABC_tran (HMM E-Value=0)
Length = 844
Score = 27.9 bits (59), Expect = 4.6
Identities = 25/101 (24%), Positives = 44/101 (43%), Gaps = 4/101 (3%)
Frame = +3
Query: 63 HVGFDSLPDQLVSK----SIQNGFVFNILCIGETGLGKSTLMDSLFNTNFESSPSPHNLP 230
H + S PD V K +I++G + +GE+G GKSTL+ L ++ + +
Sbjct: 123 HFQYPSRPDVKVLKGLHLTIRSGQT--VALVGESGCGKSTLI-KLVQRFYDPAEGTVCMD 179
Query: 231 TVKLKAHTMSWRRAMSG*S*QSVTLSVTGDQXNKEYSFKAV 353
+ +++ + W R G Q L T N Y + +
Sbjct: 180 GIDIRSLNLKWLRQHIGVVSQEPILFATTVAENIRYGREGI 220
>SB_13045| Best HMM Match : Ras (HMM E-Value=0)
Length = 629
Score = 27.5 bits (58), Expect = 6.1
Identities = 9/28 (32%), Positives = 19/28 (67%)
Frame = +3
Query: 120 FVFNILCIGETGLGKSTLMDSLFNTNFE 203
+++ I+ IG++G+GKS+L+ F+
Sbjct: 11 YLYKIVLIGDSGVGKSSLLSRFTRNEFD 38
>SB_4971| Best HMM Match : Ras (HMM E-Value=0)
Length = 209
Score = 27.5 bits (58), Expect = 6.1
Identities = 10/30 (33%), Positives = 21/30 (70%)
Frame = +3
Query: 120 FVFNILCIGETGLGKSTLMDSLFNTNFESS 209
++F +L IG++G+GKS+L+ + F ++
Sbjct: 7 YLFKLLLIGDSGVGKSSLLLRFADDTFSNT 36
>SB_50995| Best HMM Match : Foamy_BEL (HMM E-Value=2.4)
Length = 354
Score = 27.1 bits (57), Expect = 8.0
Identities = 18/55 (32%), Positives = 30/55 (54%), Gaps = 2/55 (3%)
Frame = +3
Query: 78 SLPDQLVSKSIQNGFV-FNILCIGETGLGKSTLMDSLFNTNFESSPS-PHNLPTV 236
+LP ++ + F+ ++ C GE+G GK+TL S +TN + P H L T+
Sbjct: 13 TLPPLDYIQAYRRAFIAWSTTCRGESGTGKATL--STMSTNAQPPPPLGHKLRTI 65
>SB_8853| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 76
Score = 27.1 bits (57), Expect = 8.0
Identities = 10/27 (37%), Positives = 17/27 (62%)
Frame = +3
Query: 120 FVFNILCIGETGLGKSTLMDSLFNTNF 200
++F I+ IG++G+GKS L+ F
Sbjct: 17 YLFKIVLIGDSGVGKSNLLSRYTKNEF 43
>SB_21081| Best HMM Match : Pro_isomerase (HMM E-Value=0.11)
Length = 48
Score = 27.1 bits (57), Expect = 8.0
Identities = 16/37 (43%), Positives = 21/37 (56%)
Frame = +3
Query: 60 GHVGFDSLPDQLVSKSIQNGFVFNILCIGETGLGKST 170
G V F+ D+ V K+ +N F LC GE G+G ST
Sbjct: 2 GRVLFELFADK-VPKTAEN---FRALCTGEKGIGPST 34
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,655,505
Number of Sequences: 59808
Number of extensions: 282653
Number of successful extensions: 716
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 637
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 710
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1001731762
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -