Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0639
         (481 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF069739-1|AAC63272.2|  690|Apis mellifera translation initiatio...    24   0.74 
AB072429-1|BAB83990.1|  388|Apis mellifera IP3phosphatase protein.     23   1.3  
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    23   1.7  
AB086196-1|BAD06465.1|  289|Apis mellifera Period protein.             23   1.7  
U15955-1|AAA67443.1|   95|Apis mellifera defensin precursor prot...    21   6.9  
DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    21   6.9  
AY496432-1|AAS75803.1|   95|Apis mellifera defensin/royalisin pr...    21   6.9  
AJ308527-1|CAC33429.1|   57|Apis mellifera defensin protein.           21   6.9  
DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chlor...    21   9.1  
DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chlor...    21   9.1  

>AF069739-1|AAC63272.2|  690|Apis mellifera translation initiation
           factor 2 protein.
          Length = 690

 Score = 24.2 bits (50), Expect = 0.74
 Identities = 10/26 (38%), Positives = 16/26 (61%)
 Frame = +3

Query: 132 ILCIGETGLGKSTLMDSLFNTNFESS 209
           +  +G    GK+TL+D+L NT+   S
Sbjct: 148 VTIMGHVDHGKTTLLDALRNTSIAKS 173


>AB072429-1|BAB83990.1|  388|Apis mellifera IP3phosphatase protein.
          Length = 388

 Score = 23.4 bits (48), Expect = 1.3
 Identities = 7/21 (33%), Positives = 14/21 (66%)
 Frame = +3

Query: 405 IKHSLSNYHNNKLHVCLYFIY 467
           ++H+L  +HN+K     YF++
Sbjct: 206 LEHTLDRFHNDKYSNVPYFLF 226


>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 23.0 bits (47), Expect = 1.7
 Identities = 9/30 (30%), Positives = 16/30 (53%)
 Frame = +1

Query: 391 NKNSRSNIHCPIIITTNCMSVCTSSIQQSH 480
           NK +RSN++ P  +T +       + +Q H
Sbjct: 253 NKEARSNLYLPFHLTLSFRDFRDRTTEQQH 282


>AB086196-1|BAD06465.1|  289|Apis mellifera Period protein.
          Length = 289

 Score = 23.0 bits (47), Expect = 1.7
 Identities = 9/30 (30%), Positives = 16/30 (53%)
 Frame = +1

Query: 391 NKNSRSNIHCPIIITTNCMSVCTSSIQQSH 480
           NK +RSN++ P  +T +       + +Q H
Sbjct: 248 NKEARSNLYLPFHLTLSFRDFRDRTTEQQH 277


>U15955-1|AAA67443.1|   95|Apis mellifera defensin precursor
           protein.
          Length = 95

 Score = 21.0 bits (42), Expect = 6.9
 Identities = 8/22 (36%), Positives = 13/22 (59%)
 Frame = +2

Query: 251 HYELEESNVRLKLTICDTVSYR 316
           H+E EE   R +   CD +S++
Sbjct: 31  HFENEERADRHRRVTCDLLSFK 52


>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 428

 Score = 21.0 bits (42), Expect = 6.9
 Identities = 12/39 (30%), Positives = 17/39 (43%)
 Frame = -1

Query: 118 PFCMLLLTSWSGRLSKPTCPESFKVRRVGSALVGSTSIA 2
           P C++++ SW     KP    +     V S L  ST  A
Sbjct: 254 PTCLIVIMSWVSFWIKPEAAPARVTLGVTSLLTLSTQHA 292


>AY496432-1|AAS75803.1|   95|Apis mellifera defensin/royalisin
           precursor protein.
          Length = 95

 Score = 21.0 bits (42), Expect = 6.9
 Identities = 8/22 (36%), Positives = 13/22 (59%)
 Frame = +2

Query: 251 HYELEESNVRLKLTICDTVSYR 316
           H+E EE   R +   CD +S++
Sbjct: 31  HFENEERADRHRRVTCDLLSFK 52


>AJ308527-1|CAC33429.1|   57|Apis mellifera defensin protein.
          Length = 57

 Score = 21.0 bits (42), Expect = 6.9
 Identities = 8/22 (36%), Positives = 13/22 (59%)
 Frame = +2

Query: 251 HYELEESNVRLKLTICDTVSYR 316
           H+E EE   R +   CD +S++
Sbjct: 6   HFENEERADRHRRVTCDLLSFK 27


>DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 20.6 bits (41), Expect = 9.1
 Identities = 6/10 (60%), Positives = 8/10 (80%)
 Frame = -1

Query: 118 PFCMLLLTSW 89
           P CML++ SW
Sbjct: 251 PCCMLVIVSW 260


>DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 20.6 bits (41), Expect = 9.1
 Identities = 6/10 (60%), Positives = 8/10 (80%)
 Frame = -1

Query: 118 PFCMLLLTSW 89
           P CML++ SW
Sbjct: 251 PCCMLVIVSW 260


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 131,111
Number of Sequences: 438
Number of extensions: 2846
Number of successful extensions: 10
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 13051674
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)