Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ce--0639
(481 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g03530.1 68418.m00309 Ras-related GTP-binding family protein ... 31 0.30
At4g15810.1 68417.m02406 chloroplast outer membrane protein, put... 31 0.30
At5g24760.2 68418.m02922 alcohol dehydrogenase, putative similar... 31 0.40
At5g24760.1 68418.m02923 alcohol dehydrogenase, putative similar... 31 0.40
At3g09910.1 68416.m01181 Ras-related GTP-binding protein, putati... 31 0.53
At1g43890.1 68414.m05059 Ras-related GTP-binding protein, putati... 31 0.53
At5g45490.1 68418.m05588 disease resistance protein-related cont... 30 0.93
At1g17970.1 68414.m02223 zinc finger (C3HC4-type RING finger) fa... 30 0.93
At1g02530.1 68414.m00204 multidrug resistance P-glycoprotein, pu... 30 0.93
At4g01830.1 68417.m00240 multidrug resistance P-glycoprotein, pu... 29 1.2
At4g01820.1 68417.m00239 multidrug resistance P-glycoprotein, pu... 29 1.2
At3g62150.1 68416.m06983 multidrug resistant (MDR) ABC transport... 29 1.2
At2g47000.1 68415.m05871 multidrug resistant (MDR) ABC transport... 29 1.2
At1g02520.1 68414.m00203 multidrug resistance P-glycoprotein, pu... 29 1.2
At5g46540.1 68418.m05730 ABC transporter family protein contains... 29 1.6
At2g15790.1 68415.m01810 peptidyl-prolyl cis-trans isomerase / c... 29 1.6
At1g55970.1 68414.m06419 histone acetyltransferase 4 (HAC4) simi... 29 1.6
At1g53350.1 68414.m06048 disease resistance protein (CC-NBS-LRR ... 29 2.1
At5g20300.1 68418.m02416 chloroplast outer membrane protein, put... 28 2.8
At2g07680.1 68415.m00992 ABC transporter family protein 28 3.7
At4g19900.1 68417.m02916 glycosyl transferase-related contains P... 27 5.0
At4g02510.1 68417.m00343 chloroplast outer membrane protein, put... 27 5.0
At5g60860.1 68418.m07634 Ras-related GTP-binding protein, putati... 27 6.5
At5g45750.1 68418.m05624 Ras-related GTP-binding protein, putati... 27 6.5
At5g36860.1 68418.m04416 Ulp1 protease family protein contains P... 27 6.5
At5g23110.1 68418.m02703 zinc finger (C3HC4-type RING finger) fa... 27 6.5
At4g38230.1 68417.m05399 calcium-dependent protein kinase, putat... 27 6.5
At4g19510.2 68417.m02870 disease resistance protein (TIR-NBS-LRR... 27 6.5
At4g19510.1 68417.m02869 disease resistance protein (TIR-NBS-LRR... 27 6.5
At4g18800.1 68417.m02776 Ras-related GTP-binding family protein ... 27 6.5
At4g18050.1 68417.m02686 ABC transporter family protein contains... 27 6.5
At3g63400.2 68416.m07138 peptidyl-prolyl cis-trans isomerase cyc... 27 6.5
At3g63400.1 68416.m07137 peptidyl-prolyl cis-trans isomerase cyc... 27 6.5
At3g15060.1 68416.m01905 Ras-related GTP-binding family protein ... 27 6.5
At2g14770.2 68415.m01669 Ulp1 protease family protein similar to... 27 6.5
At2g14770.1 68415.m01668 Ulp1 protease family protein similar to... 27 6.5
At1g67120.1 68414.m07636 midasin-related similar to Midasin (MID... 27 6.5
At1g55550.1 68414.m06358 kinesin motor protein-related Similar t... 27 6.5
At1g16920.1 68414.m02051 Ras-related GTP-binding protein, putati... 27 6.5
At1g09630.1 68414.m01080 Ras-related GTP-binding protein, putati... 27 6.5
At5g43560.2 68418.m05326 meprin and TRAF homology domain-contain... 27 8.7
At5g43560.1 68418.m05325 meprin and TRAF homology domain-contain... 27 8.7
At5g12310.1 68418.m01447 zinc finger (C3HC4-type RING finger) fa... 27 8.7
At4g35860.1 68417.m05093 Ras-related GTP-binding protein, putati... 27 8.7
At4g18430.1 68417.m02735 Ras-related GTP-binding protein, putati... 27 8.7
At4g17170.1 68417.m02583 Rab2-like GTP-binding protein (RAB2) id... 27 8.7
At3g46830.1 68416.m05083 Ras-related protein (RAB11A) / small GT... 27 8.7
At3g13980.1 68416.m01765 expressed protein 27 8.7
At3g13870.1 68416.m01753 root hair defective 3 (RHD3) identical ... 27 8.7
At1g72960.1 68414.m08438 root hair defective 3 GTP-binding (RHD3... 27 8.7
At1g27780.1 68414.m03399 Ulp1 protease family protein similar to... 27 8.7
At1g25886.1 68414.m03180 Ulp1 protease family protein contains P... 27 8.7
At1g12290.1 68414.m01421 disease resistance protein (CC-NBS-LRR ... 27 8.7
At1g07410.1 68414.m00790 Ras-related GTP-binding protein, putati... 27 8.7
At1g06400.1 68414.m00677 Ras-related GTP-binding protein (ARA-2)... 27 8.7
>At5g03530.1 68418.m00309 Ras-related GTP-binding family protein
contains Pfam profile: PF00071 Ras family
Length = 210
Score = 31.5 bits (68), Expect = 0.30
Identities = 21/59 (35%), Positives = 35/59 (59%), Gaps = 2/59 (3%)
Frame = +3
Query: 99 SKSIQNGF--VFNILCIGETGLGKSTLMDSLFNTNFESSPSPHNLPTVKLKAHTMSWRR 269
S S Q+G+ F IL IG++G+GKS+L+ S +++ E +P K+K T+ +R
Sbjct: 3 SSSGQSGYDLSFKILLIGDSGVGKSSLLVSFISSSVEDL-APTIGVDFKIKQLTVGGKR 60
>At4g15810.1 68417.m02406 chloroplast outer membrane protein,
putative similar to chloroplast protein import component
Toc159 [Pisum sativum] GI:8489806, chloroplast outer
envelope protein 86 [Pisum sativum] GI:599958,
GTP-binding protein [Pisum sativum] GI:576509
Length = 898
Score = 31.5 bits (68), Expect = 0.30
Identities = 15/36 (41%), Positives = 23/36 (63%)
Frame = +3
Query: 81 LPDQLVSKSIQNGFVFNILCIGETGLGKSTLMDSLF 188
LP+Q + F N+L IG+TG+GKS ++S+F
Sbjct: 597 LPEQEFPADLD--FSINVLVIGKTGVGKSATVNSIF 630
>At5g24760.2 68418.m02922 alcohol dehydrogenase, putative similar to
alcohol dehydrogenase from Solanum tuberosum
[SP|p14673]; contains Pfam zinc-binding dehydrogenase
domain PF00107
Length = 352
Score = 31.1 bits (67), Expect = 0.40
Identities = 15/59 (25%), Positives = 31/59 (52%), Gaps = 3/59 (5%)
Frame = +3
Query: 6 IDVEPTKAEPTLRTLKLSGHVGFDSLPD---QLVSKSIQNGFVFNILCIGETGLGKSTL 173
+D+ P KAE +T ++ + + L + Q++ + G F+ C+G+TG+ + L
Sbjct: 198 VDINPAKAEQA-KTFGVTDFINSNDLSEPIPQVIKRMTGGGADFSFECVGDTGIATTAL 255
>At5g24760.1 68418.m02923 alcohol dehydrogenase, putative similar to
alcohol dehydrogenase from Solanum tuberosum
[SP|p14673]; contains Pfam zinc-binding dehydrogenase
domain PF00107
Length = 381
Score = 31.1 bits (67), Expect = 0.40
Identities = 15/59 (25%), Positives = 31/59 (52%), Gaps = 3/59 (5%)
Frame = +3
Query: 6 IDVEPTKAEPTLRTLKLSGHVGFDSLPD---QLVSKSIQNGFVFNILCIGETGLGKSTL 173
+D+ P KAE +T ++ + + L + Q++ + G F+ C+G+TG+ + L
Sbjct: 227 VDINPAKAEQA-KTFGVTDFINSNDLSEPIPQVIKRMTGGGADFSFECVGDTGIATTAL 284
>At3g09910.1 68416.m01181 Ras-related GTP-binding protein, putative
similar to GTP-binding protein GI:2723477 from
[Arabidopsis thaliana] ;contains Pfam profile: PF00071
Ras family
Length = 205
Score = 30.7 bits (66), Expect = 0.53
Identities = 16/37 (43%), Positives = 26/37 (70%), Gaps = 2/37 (5%)
Frame = +3
Query: 99 SKSIQNGF--VFNILCIGETGLGKSTLMDSLFNTNFE 203
S S Q+G+ F IL IG++G+GKS+L+ S +++ E
Sbjct: 3 SSSGQSGYDLSFKILLIGDSGVGKSSLLLSFISSSVE 39
>At1g43890.1 68414.m05059 Ras-related GTP-binding protein, putative
similar to GTP-binding protein(RAB1Y) GI:1370173 from
(Lotus japonicus)
Length = 212
Score = 30.7 bits (66), Expect = 0.53
Identities = 13/33 (39%), Positives = 24/33 (72%), Gaps = 1/33 (3%)
Frame = +3
Query: 120 FVFNILCIGETGLGKSTLMDSLFNTNFES-SPS 215
++F +L IG++G+GKS+L+ S + F+ SP+
Sbjct: 12 YLFKVLLIGDSGVGKSSLLLSFTSNTFDDLSPT 44
>At5g45490.1 68418.m05588 disease resistance protein-related
contains Pfam domain, PF00931: NB-ARC domain, a novel
signalling motif found in plant resistance gene products
Length = 354
Score = 29.9 bits (64), Expect = 0.93
Identities = 22/66 (33%), Positives = 36/66 (54%), Gaps = 7/66 (10%)
Frame = +3
Query: 15 EPTKAEPTLRT-LKLSGHV--GFD----SLPDQLVSKSIQNGFVFNILCIGETGLGKSTL 173
+ + E L+T KL GH GFD SL L+ + ++ F +++ +GE G+GK+ L
Sbjct: 42 DDNEEEERLKTESKLPGHDIHGFDNEIKSLQHFLLDQKVRREFK-SLVIVGEYGVGKTAL 100
Query: 174 MDSLFN 191
+FN
Sbjct: 101 CQKIFN 106
>At1g17970.1 68414.m02223 zinc finger (C3HC4-type RING finger)
family protein similar to Pfam domain, PF00097: Zinc
finger, C3HC4 type (RING finger)
Length = 368
Score = 29.9 bits (64), Expect = 0.93
Identities = 16/39 (41%), Positives = 24/39 (61%), Gaps = 1/39 (2%)
Frame = +3
Query: 12 VEPTKAEPTLRTLKLSGHVGFDSLPDQLVS-KSIQNGFV 125
V ++AEPT+ + + GH+ S PD L + +QNGFV
Sbjct: 218 VTSSRAEPTMLSSRCRGHLP-RSYPDDLTEMRMLQNGFV 255
>At1g02530.1 68414.m00204 multidrug resistance P-glycoprotein,
putative similar to multidrug-resistant protein CjMDR1
GI:14715462 from [Coptis japonica]
Length = 1273
Score = 29.9 bits (64), Expect = 0.93
Identities = 16/50 (32%), Positives = 25/50 (50%)
Frame = +3
Query: 132 ILCIGETGLGKSTLMDSLFNTNFESSPSPHNLPTVKLKAHTMSWRRAMSG 281
+ +GE+G GKST++ SL ++ L V+LK + W R G
Sbjct: 1058 VALVGESGSGKSTVI-SLLQRFYDPDSGQITLDGVELKKLQLKWLRQQMG 1106
>At4g01830.1 68417.m00240 multidrug resistance P-glycoprotein,
putative similar to multidrug resistant P-glycoprotein
GI:4204793 from [Solanum tuberosum]
Length = 1230
Score = 29.5 bits (63), Expect = 1.2
Identities = 16/50 (32%), Positives = 25/50 (50%)
Frame = +3
Query: 132 ILCIGETGLGKSTLMDSLFNTNFESSPSPHNLPTVKLKAHTMSWRRAMSG 281
+ +GE+G GKST++ SL ++ L V+LK + W R G
Sbjct: 1016 VALVGESGSGKSTVI-SLLQRFYDPDSGHITLDGVELKKLRLKWLRQQMG 1064
Score = 27.5 bits (58), Expect = 5.0
Identities = 23/78 (29%), Positives = 35/78 (44%), Gaps = 1/78 (1%)
Frame = +3
Query: 141 IGETGLGKSTLMDSLFNTNFESSPSPHNLPTVKLKAHTMSWRRAMSG*S*QSVTLSVTGD 320
+GE+G GKST++ SL ++ + + V LK + W R G Q L +
Sbjct: 387 VGESGSGKSTVI-SLIERFYDPNSGQVLIDGVDLKEFQLKWIRGKIGLVSQEPVLFSSSI 445
Query: 321 QXNKEYSFK-AVVDYIDA 371
N Y + A V+ I A
Sbjct: 446 MENIGYGKEGATVEEIQA 463
>At4g01820.1 68417.m00239 multidrug resistance P-glycoprotein,
putative similar to multidrug-resistant protein CjMDR1
GI:14715462 from [Coptis japonica]
Length = 1229
Score = 29.5 bits (63), Expect = 1.2
Identities = 16/50 (32%), Positives = 25/50 (50%)
Frame = +3
Query: 132 ILCIGETGLGKSTLMDSLFNTNFESSPSPHNLPTVKLKAHTMSWRRAMSG 281
+ +GE+G GKST++ SL ++ L V+LK + W R G
Sbjct: 1015 VALVGESGSGKSTVI-SLLQRFYDPDSGHITLDRVELKKLQLKWVRQQMG 1063
>At3g62150.1 68416.m06983 multidrug resistant (MDR) ABC transporter,
putative similar to multidrug-resistant protein CjMDR1
GI:14715462 from [Coptis japonica]; contains Pfam
profiles PF00005: ABC transporter, PF00664: ABC
transporter transmembrane region
Length = 1292
Score = 29.5 bits (63), Expect = 1.2
Identities = 15/50 (30%), Positives = 26/50 (52%)
Frame = +3
Query: 132 ILCIGETGLGKSTLMDSLFNTNFESSPSPHNLPTVKLKAHTMSWRRAMSG 281
I +GE+G GKST++ +L ++ L V++K + W R +G
Sbjct: 1079 IALVGESGSGKSTVI-ALLQRFYDPDSGQITLDGVEIKTLQLKWLRQQTG 1127
>At2g47000.1 68415.m05871 multidrug resistant (MDR) ABC transporter,
putative similar to multidrug-resistant protein CjMDR1
[Coptis japonica] GI:14715462, MDR-like p-glycoprotein
[Arabidopsis thaliana] GI:24324262; contains Pfam
profiles PF00005: ABC transporter, PF00664: ABC
transporter transmembrane region
Length = 1286
Score = 29.5 bits (63), Expect = 1.2
Identities = 14/50 (28%), Positives = 27/50 (54%)
Frame = +3
Query: 132 ILCIGETGLGKSTLMDSLFNTNFESSPSPHNLPTVKLKAHTMSWRRAMSG 281
+ +GE+G GKST++ +L ++ L V++K+ + W R +G
Sbjct: 1073 VALVGESGSGKSTVI-ALLQRFYDPDSGEITLDGVEIKSLRLKWLRQQTG 1121
>At1g02520.1 68414.m00203 multidrug resistance P-glycoprotein,
putative similar to multidrug-resistant protein CjMDR1
GI:14715462 from [Coptis japonica]
Length = 1278
Score = 29.5 bits (63), Expect = 1.2
Identities = 16/50 (32%), Positives = 25/50 (50%)
Frame = +3
Query: 132 ILCIGETGLGKSTLMDSLFNTNFESSPSPHNLPTVKLKAHTMSWRRAMSG 281
+ +GE+G GKST++ SL ++ L V+LK + W R G
Sbjct: 1063 VALVGESGSGKSTVI-SLLQRFYDPDSGHITLDGVELKKLQLKWLRQQMG 1111
Score = 27.9 bits (59), Expect = 3.7
Identities = 23/78 (29%), Positives = 35/78 (44%), Gaps = 1/78 (1%)
Frame = +3
Query: 141 IGETGLGKSTLMDSLFNTNFESSPSPHNLPTVKLKAHTMSWRRAMSG*S*QSVTLSVTGD 320
+GE+G GKST++ SL ++ + V LK + W R+ G Q L +
Sbjct: 415 VGESGSGKSTVI-SLIERFYDPKSGAVLIDGVNLKEFQLKWIRSKIGLVSQEPVLFSSSI 473
Query: 321 QXNKEYSFK-AVVDYIDA 371
N Y + A V+ I A
Sbjct: 474 MENIAYGKENATVEEIKA 491
>At5g46540.1 68418.m05730 ABC transporter family protein contains Pfam
profile: PF00005 ABC transporter; similar to
multidrug-resistant protein CjMDR1 GI:14715462 from
[Coptis japonica]
Length = 1248
Score = 29.1 bits (62), Expect = 1.6
Identities = 15/50 (30%), Positives = 27/50 (54%)
Frame = +3
Query: 132 ILCIGETGLGKSTLMDSLFNTNFESSPSPHNLPTVKLKAHTMSWRRAMSG 281
+ +GE+G GKST++ SL ++ L V++++ +SW R G
Sbjct: 1036 VALVGESGSGKSTVI-SLLERFYDPDSGKILLDQVEIQSLKLSWLREQMG 1084
>At2g15790.1 68415.m01810 peptidyl-prolyl cis-trans isomerase /
cyclophilin-40 (CYP40) / rotamase identical to
cyclophilin-40 [Arabidopsis thaliana] GI:13442983;
supporting cDNA gi|13442982|gb|AY026065.1|
Length = 361
Score = 29.1 bits (62), Expect = 1.6
Identities = 16/40 (40%), Positives = 24/40 (60%)
Frame = +3
Query: 51 KLSGHVGFDSLPDQLVSKSIQNGFVFNILCIGETGLGKST 170
+L G + + L D +V K+ +N F +LC GE GLG +T
Sbjct: 15 ELEGRIVIE-LYDDVVPKTAEN---FRLLCTGEKGLGPNT 50
>At1g55970.1 68414.m06419 histone acetyltransferase 4 (HAC4) similar
to CREB-binding protein GB:AAC51770 GI:2443859 from
[Homo sapiens]; contains Pfam PF02135: TAZ zinc finger
profile; contains Pfam PF00569: Zinc finger, ZZ type
domain; identical to histone acetyltransferase HAC4
(GI:14794966) {Arabidopsis thaliana}
Length = 1456
Score = 29.1 bits (62), Expect = 1.6
Identities = 16/37 (43%), Positives = 23/37 (62%), Gaps = 1/37 (2%)
Frame = +3
Query: 129 NILCIGETGLGKSTLMDSLFNTNFESSPSPH-NLPTV 236
N+ + +T L K L L+NTNF+S+P+ NLP V
Sbjct: 321 NLQPMQQTPLPKRQLHHPLWNTNFQSAPNNRDNLPQV 357
>At1g53350.1 68414.m06048 disease resistance protein (CC-NBS-LRR
class), putative domain signature CC-NBS-LRR exists,
suggestive of a disease resistance protein.
Length = 906
Score = 28.7 bits (61), Expect = 2.1
Identities = 14/42 (33%), Positives = 23/42 (54%)
Frame = +3
Query: 66 VGFDSLPDQLVSKSIQNGFVFNILCIGETGLGKSTLMDSLFN 191
VG D ++LV ++N V + G G+GK+TL +F+
Sbjct: 164 VGLDQSVEELVDHLVENDSVQVVSVSGMGGIGKTTLARQVFH 205
>At5g20300.1 68418.m02416 chloroplast outer membrane protein,
putative similar to chloroplast protein import component
Toc159 [Pisum sativum] GI:8489806, chloroplast outer
envelope protein 86 [Pisum sativum] GI:599958,
GTP-binding protein [Pisum sativum] GI:576509
Length = 793
Score = 28.3 bits (60), Expect = 2.8
Identities = 11/23 (47%), Positives = 17/23 (73%)
Frame = +3
Query: 120 FVFNILCIGETGLGKSTLMDSLF 188
F IL +G+TG+GKS ++S+F
Sbjct: 165 FSLRILVLGKTGVGKSATINSIF 187
>At2g07680.1 68415.m00992 ABC transporter family protein
Length = 1194
Score = 27.9 bits (59), Expect = 3.7
Identities = 16/39 (41%), Positives = 25/39 (64%), Gaps = 2/39 (5%)
Frame = +3
Query: 78 SLPDQL--VSKSIQNGFVFNILCIGETGLGKSTLMDSLF 188
+LP L +S +IQ G + IG TG GKS+++++LF
Sbjct: 970 TLPPALTQISFTIQGGMHVGV--IGRTGAGKSSILNALF 1006
>At4g19900.1 68417.m02916 glycosyl transferase-related contains Pfam
profiles PF01535: PPR repeat, PF04572: Alpha
1,4-glycosyltransferase conserved region, PF04488:
Glycosyltransferase sugar-binding region containing DXD
motif; several hypothetical proteins - Arabidopsis
thaliana
Length = 1302
Score = 27.5 bits (58), Expect = 5.0
Identities = 12/37 (32%), Positives = 21/37 (56%)
Frame = +1
Query: 370 HNSRPISNKNSRSNIHCPIIITTNCMSVCTSSIQQSH 480
H S +S +S S+ ++ + C VCTS ++Q+H
Sbjct: 637 HESSDLSLPSSPSSSPSQCLVKSVCSLVCTSYLRQNH 673
>At4g02510.1 68417.m00343 chloroplast outer membrane protein,
putative similar to chloroplast protein import component
Toc159 [Pisum sativum] GI:8489806, chloroplast outer
envelope protein 86 [Pisum sativum] GI:599958,
GTP-binding protein [Pisum sativum] GI:576509
Length = 1503
Score = 27.5 bits (58), Expect = 5.0
Identities = 11/29 (37%), Positives = 17/29 (58%)
Frame = +3
Query: 120 FVFNILCIGETGLGKSTLMDSLFNTNFES 206
F NIL +G+ G+GKS ++S+ S
Sbjct: 854 FSLNILVLGKAGVGKSATINSILGNQIAS 882
>At5g60860.1 68418.m07634 Ras-related GTP-binding protein, putative
similar to GTP-binding protein GI:303742 from [Pisum
sativum]
Length = 217
Score = 27.1 bits (57), Expect = 6.5
Identities = 9/27 (33%), Positives = 17/27 (62%)
Frame = +3
Query: 120 FVFNILCIGETGLGKSTLMDSLFNTNF 200
++F ++ IG++G+GKS L+ F
Sbjct: 12 YLFKVVLIGDSGVGKSNLLSRFTRNEF 38
>At5g45750.1 68418.m05624 Ras-related GTP-binding protein, putative
similar to GTP-binding protein GI:303744 from [Pisum
sativum]
Length = 216
Score = 27.1 bits (57), Expect = 6.5
Identities = 9/27 (33%), Positives = 17/27 (62%)
Frame = +3
Query: 120 FVFNILCIGETGLGKSTLMDSLFNTNF 200
++F ++ IG++G+GKS L+ F
Sbjct: 12 YLFKVVLIGDSGVGKSNLLSRFTKNEF 38
>At5g36860.1 68418.m04416 Ulp1 protease family protein contains Pfam
profile PF02902: Ulp1 protease family, C-terminal
catalytic domain
Length = 1204
Score = 27.1 bits (57), Expect = 6.5
Identities = 17/43 (39%), Positives = 22/43 (51%), Gaps = 1/43 (2%)
Frame = -1
Query: 160 PRPVSPIHRILKTKPFCMLLLTSWSGRLSK-PTCPESFKVRRV 35
P +S I ++LK KP LL S G+L K P SF + V
Sbjct: 79 PEYISDIAKVLKGKPEMQFLLNSPFGKLFKIPKNKASFNAKLV 121
>At5g23110.1 68418.m02703 zinc finger (C3HC4-type RING finger) family
protein contains Pfam profile: PF00097 zinc finger, C3HC4
type (RING finger)
Length = 4706
Score = 27.1 bits (57), Expect = 6.5
Identities = 10/27 (37%), Positives = 16/27 (59%)
Frame = +3
Query: 75 DSLPDQLVSKSIQNGFVFNILCIGETG 155
DSLP QLV + + G +L + ++G
Sbjct: 2012 DSLPHQLVDREVPEGVYSKLLAVAQSG 2038
>At4g38230.1 68417.m05399 calcium-dependent protein kinase, putative
/ CDPK, putative calmodulin-domain protein kinase CDPK
isoform 6 [Arabidopsis thaliana] gi|1399275|gb|AAB03246;
contains protein kinase domain, Pfam:PF00069; contains
EF hand domain (calcium-binding EF-hand), Pfam:PF00036,
INTERPRO:IPR002048
Length = 340
Score = 27.1 bits (57), Expect = 6.5
Identities = 13/29 (44%), Positives = 18/29 (62%)
Frame = +3
Query: 54 LSGHVGFDSLPDQLVSKSIQNGFVFNILC 140
L GH+ FDS P L+S S +N + +LC
Sbjct: 93 LKGHIDFDSDPWPLISDSAKN-LIRGMLC 120
>At4g19510.2 68417.m02870 disease resistance protein (TIR-NBS-LRR
class), putative domain signature TIR-NBS-LRR exists,
suggestive of a disease resistance protein.
Length = 1049
Score = 27.1 bits (57), Expect = 6.5
Identities = 9/21 (42%), Positives = 16/21 (76%)
Frame = +3
Query: 141 IGETGLGKSTLMDSLFNTNFE 203
+G TG+GK+T+ D ++ NF+
Sbjct: 220 LGMTGIGKTTVADIVYKQNFQ 240
>At4g19510.1 68417.m02869 disease resistance protein (TIR-NBS-LRR
class), putative domain signature TIR-NBS-LRR exists,
suggestive of a disease resistance protein.
Length = 1049
Score = 27.1 bits (57), Expect = 6.5
Identities = 9/21 (42%), Positives = 16/21 (76%)
Frame = +3
Query: 141 IGETGLGKSTLMDSLFNTNFE 203
+G TG+GK+T+ D ++ NF+
Sbjct: 220 LGMTGIGKTTVADIVYKQNFQ 240
>At4g18800.1 68417.m02776 Ras-related GTP-binding family protein
similar to ras-related GTP binding protein RIC2
SP:P40393 from [Oryza sativa]; contains Pfam profile:
PF00071 Ras family
Length = 214
Score = 27.1 bits (57), Expect = 6.5
Identities = 9/27 (33%), Positives = 17/27 (62%)
Frame = +3
Query: 120 FVFNILCIGETGLGKSTLMDSLFNTNF 200
++F ++ IG++G+GKS L+ F
Sbjct: 12 YLFKVVLIGDSGVGKSNLLSRFTRNEF 38
>At4g18050.1 68417.m02686 ABC transporter family protein contains Pfam
profile: PF00005 ABC transporter; similar to
multidrug-resistant protein CjMDR1 GI:14715462 from
[Coptis japonica]
Length = 1281
Score = 27.1 bits (57), Expect = 6.5
Identities = 13/50 (26%), Positives = 25/50 (50%)
Frame = +3
Query: 132 ILCIGETGLGKSTLMDSLFNTNFESSPSPHNLPTVKLKAHTMSWRRAMSG 281
+ +GE+G GKST++ S+ + + V+++ +SW R G
Sbjct: 1024 VALVGESGSGKSTVI-SMIERFYNPDSGKILIDQVEIQTFKLSWLRQQMG 1072
>At3g63400.2 68416.m07138 peptidyl-prolyl cis-trans isomerase
cyclophilin-type family protein similar to cyclophylin
[Digitalis lanata] GI:1563719; contains Pfam profile
PF00160: peptidyl-prolyl cis-trans isomerase,
cyclophilin-type; contains AT-donor splice site at
intron 9
Length = 387
Score = 27.1 bits (57), Expect = 6.5
Identities = 13/26 (50%), Positives = 17/26 (65%)
Frame = +3
Query: 93 LVSKSIQNGFVFNILCIGETGLGKST 170
+V K+ +N F LC GE G+GKST
Sbjct: 31 VVPKTAEN---FRALCTGEAGVGKST 53
>At3g63400.1 68416.m07137 peptidyl-prolyl cis-trans isomerase
cyclophilin-type family protein similar to cyclophylin
[Digitalis lanata] GI:1563719; contains Pfam profile
PF00160: peptidyl-prolyl cis-trans isomerase,
cyclophilin-type; contains AT-donor splice site at
intron 9
Length = 570
Score = 27.1 bits (57), Expect = 6.5
Identities = 13/26 (50%), Positives = 17/26 (65%)
Frame = +3
Query: 93 LVSKSIQNGFVFNILCIGETGLGKST 170
+V K+ +N F LC GE G+GKST
Sbjct: 31 VVPKTAEN---FRALCTGEAGVGKST 53
>At3g15060.1 68416.m01905 Ras-related GTP-binding family protein
similar to GTP-binding protein GI:303742 from [Pisum
sativum]; contains Pfam profile: PF00071 ras family
Length = 217
Score = 27.1 bits (57), Expect = 6.5
Identities = 9/27 (33%), Positives = 17/27 (62%)
Frame = +3
Query: 120 FVFNILCIGETGLGKSTLMDSLFNTNF 200
F++ ++ IG++G+GKS L+ F
Sbjct: 12 FLYKVVLIGDSGVGKSNLLSRFTRNEF 38
>At2g14770.2 68415.m01669 Ulp1 protease family protein similar to
At3g24380, At5g36840, At5g35010, At3g42740, At4g05290,
At2g14770, At3g43390, At2g05560, At4g08880, At1g34730,
At1g27790, At1g34740, At1g27780, At5g36850, At3g42730,
At1g52020, At3g24390, At4g05280, At1g25886, At4g03300;
contains Pfam profile PF02902: Ulp1 protease family,
C-terminal catalytic domain
Length = 1158
Score = 27.1 bits (57), Expect = 6.5
Identities = 17/43 (39%), Positives = 22/43 (51%), Gaps = 1/43 (2%)
Frame = -1
Query: 160 PRPVSPIHRILKTKPFCMLLLTSWSGRLSK-PTCPESFKVRRV 35
P +S I ++LK KP LL S G+L K P SF + V
Sbjct: 79 PEYISDIAKVLKGKPEMQFLLDSSFGKLFKIPKNKASFNAKLV 121
>At2g14770.1 68415.m01668 Ulp1 protease family protein similar to
At3g24380, At5g36840, At5g35010, At3g42740, At4g05290,
At2g14770, At3g43390, At2g05560, At4g08880, At1g34730,
At1g27790, At1g34740, At1g27780, At5g36850, At3g42730,
At1g52020, At3g24390, At4g05280, At1g25886, At4g03300;
contains Pfam profile PF02902: Ulp1 protease family,
C-terminal catalytic domain
Length = 1139
Score = 27.1 bits (57), Expect = 6.5
Identities = 17/43 (39%), Positives = 22/43 (51%), Gaps = 1/43 (2%)
Frame = -1
Query: 160 PRPVSPIHRILKTKPFCMLLLTSWSGRLSK-PTCPESFKVRRV 35
P +S I ++LK KP LL S G+L K P SF + V
Sbjct: 79 PEYISDIAKVLKGKPEMQFLLDSSFGKLFKIPKNKASFNAKLV 121
>At1g67120.1 68414.m07636 midasin-related similar to Midasin
(MIDAS-containing protein) (Swiss-Prot:Q12019)
[Saccharomyces cerevisiae]; similar to Midasin
(MIDAS-containing protein) (Swiss-Prot:Q9NU22) [Homo
sapiens]; contains Prosite PS00017: ATP/GTP-binding site
motif A (P-loop)
Length = 5336
Score = 27.1 bits (57), Expect = 6.5
Identities = 10/18 (55%), Positives = 15/18 (83%)
Frame = +3
Query: 132 ILCIGETGLGKSTLMDSL 185
+L +GETG GK+TL+ +L
Sbjct: 670 VLLVGETGTGKTTLVQNL 687
>At1g55550.1 68414.m06358 kinesin motor protein-related Similar to
Kinesin proteins; Contains kinesin motor domain protein
motif and kinesin heavy chain signature motif
Length = 887
Score = 27.1 bits (57), Expect = 6.5
Identities = 13/33 (39%), Positives = 20/33 (60%)
Frame = +3
Query: 96 VSKSIQNGFVFNILCIGETGLGKSTLMDSLFNT 194
V KS+ +G+ I G+TG GK+ M+ L N+
Sbjct: 152 VIKSVIDGYNACIFAYGQTGTGKTYTMEGLPNS 184
>At1g16920.1 68414.m02051 Ras-related GTP-binding protein, putative
similar to GTP binding protein GI:218228 from [Vicia
faba]; identical to cDNA small GTP-binding protein
(Rab11) GI:451859
Length = 216
Score = 27.1 bits (57), Expect = 6.5
Identities = 9/27 (33%), Positives = 17/27 (62%)
Frame = +3
Query: 120 FVFNILCIGETGLGKSTLMDSLFNTNF 200
++F ++ IG++G+GKS L+ F
Sbjct: 12 YLFKVVLIGDSGVGKSNLLSRFTKNEF 38
>At1g09630.1 68414.m01080 Ras-related GTP-binding protein, putative
similar to GTP-binding protein GI:1370146 from [Lotus
japonicus]
Length = 217
Score = 27.1 bits (57), Expect = 6.5
Identities = 9/27 (33%), Positives = 17/27 (62%)
Frame = +3
Query: 120 FVFNILCIGETGLGKSTLMDSLFNTNF 200
++F ++ IG++G+GKS L+ F
Sbjct: 11 YLFKVVLIGDSGVGKSNLLSRFTRNEF 37
>At5g43560.2 68418.m05326 meprin and TRAF homology domain-containing
protein / MATH domain-containing protein weak similarity
to ubiquitin-specific protease 12 [Arabidopsis thaliana]
GI:11993471; contains Pfam profile PF00917: MATH domain
Length = 1055
Score = 26.6 bits (56), Expect = 8.7
Identities = 13/50 (26%), Positives = 25/50 (50%)
Frame = -1
Query: 160 PRPVSPIHRILKTKPFCMLLLTSWSGRLSKPTCPESFKVRRVGSALVGST 11
P +P+ ++T + S +GRL PT +++ + A+VGS+
Sbjct: 774 PTQAAPVISAVQTSTASLARSMSSTGRLGSPTHSQAYNPQSYKHAIVGSS 823
>At5g43560.1 68418.m05325 meprin and TRAF homology domain-containing
protein / MATH domain-containing protein weak similarity
to ubiquitin-specific protease 12 [Arabidopsis thaliana]
GI:11993471; contains Pfam profile PF00917: MATH domain
Length = 1055
Score = 26.6 bits (56), Expect = 8.7
Identities = 13/50 (26%), Positives = 25/50 (50%)
Frame = -1
Query: 160 PRPVSPIHRILKTKPFCMLLLTSWSGRLSKPTCPESFKVRRVGSALVGST 11
P +P+ ++T + S +GRL PT +++ + A+VGS+
Sbjct: 774 PTQAAPVISAVQTSTASLARSMSSTGRLGSPTHSQAYNPQSYKHAIVGSS 823
>At5g12310.1 68418.m01447 zinc finger (C3HC4-type RING finger)
family protein contains Pfam profile: PF00097 zinc
finger, C3HC4 type (RING finger)
Length = 254
Score = 26.6 bits (56), Expect = 8.7
Identities = 13/37 (35%), Positives = 18/37 (48%), Gaps = 3/37 (8%)
Frame = -1
Query: 115 FCMLLLTSWSGRLSKPTCPE---SFKVRRVGSALVGS 14
+C+ + W+ KPTCP+ F V AL GS
Sbjct: 65 YCVTCILRWASYKEKPTCPQCKLPFDFLNVHRALDGS 101
>At4g35860.1 68417.m05093 Ras-related GTP-binding protein, putative
similar to Rab2-like GTP-binding protein GI:1765896 from
[Arabidopsis thaliana]
Length = 211
Score = 26.6 bits (56), Expect = 8.7
Identities = 10/28 (35%), Positives = 18/28 (64%)
Frame = +3
Query: 120 FVFNILCIGETGLGKSTLMDSLFNTNFE 203
++F + IG+TG+GKS L+ + F+
Sbjct: 5 YLFKYIIIGDTGVGKSCLLLQFTDKRFQ 32
>At4g18430.1 68417.m02735 Ras-related GTP-binding protein, putative
similar to GTP-binding protein GI:303742 from [Pisum
sativum]
Length = 217
Score = 26.6 bits (56), Expect = 8.7
Identities = 9/27 (33%), Positives = 17/27 (62%)
Frame = +3
Query: 120 FVFNILCIGETGLGKSTLMDSLFNTNF 200
++F ++ IG++G+GKS L+ F
Sbjct: 12 YLFKLVLIGDSGVGKSNLLSRFTRNEF 38
>At4g17170.1 68417.m02583 Rab2-like GTP-binding protein (RAB2)
identical to Rab2-like protein (At-RAB2) GI:1765896 from
[Arabidopsis thaliana]
Length = 211
Score = 26.6 bits (56), Expect = 8.7
Identities = 10/28 (35%), Positives = 18/28 (64%)
Frame = +3
Query: 120 FVFNILCIGETGLGKSTLMDSLFNTNFE 203
++F + IG+TG+GKS L+ + F+
Sbjct: 5 YLFKYIIIGDTGVGKSCLLLQFTDKRFQ 32
>At3g46830.1 68416.m05083 Ras-related protein (RAB11A) / small
GTP-binding protein, putative identical to SP|Q96283
Ras-related protein Rab11A {Arabidopsis thaliana};
identical to cDNA Rab11 protein GI:2598228
Length = 217
Score = 26.6 bits (56), Expect = 8.7
Identities = 9/27 (33%), Positives = 17/27 (62%)
Frame = +3
Query: 120 FVFNILCIGETGLGKSTLMDSLFNTNF 200
++F I+ IG++G+GKS ++ F
Sbjct: 11 YLFKIVLIGDSGVGKSNILSRFTRNEF 37
>At3g13980.1 68416.m01765 expressed protein
Length = 357
Score = 26.6 bits (56), Expect = 8.7
Identities = 14/36 (38%), Positives = 21/36 (58%)
Frame = +3
Query: 165 STLMDSLFNTNFESSPSPHNLPTVKLKAHTMSWRRA 272
STL+D ++ + +SSP P L ++K K H R A
Sbjct: 21 STLLDQIYRSIDDSSPPP-PLESIKKKKHHHQQRNA 55
>At3g13870.1 68416.m01753 root hair defective 3 (RHD3) identical to
root hair defective 3 (RHD3) GI:1839188 from
[Arabidopsis thaliana] (Genes Dev (1997) 11(6), 799-811)
Length = 802
Score = 26.6 bits (56), Expect = 8.7
Identities = 11/20 (55%), Positives = 14/20 (70%)
Frame = +3
Query: 141 IGETGLGKSTLMDSLFNTNF 200
+G GKSTL++ LF TNF
Sbjct: 43 MGPQSSGKSTLLNHLFGTNF 62
>At1g72960.1 68414.m08438 root hair defective 3 GTP-binding (RHD3)
family protein contains Pfam profile: PF05879 root hair
defective 3 GTP-binding protein (RHD3)
Length = 748
Score = 26.6 bits (56), Expect = 8.7
Identities = 11/20 (55%), Positives = 14/20 (70%)
Frame = +3
Query: 141 IGETGLGKSTLMDSLFNTNF 200
+G GKSTL++ LF TNF
Sbjct: 1 MGPQSSGKSTLLNHLFGTNF 20
>At1g27780.1 68414.m03399 Ulp1 protease family protein similar to
At3g24380, At5g36840, At5g35010, At3g42740, At4g05290,
At2g14770, At3g43390, At2g05560, At4g08880, At1g34730,
At1g27790, At1g34740, At5g36850, At3g42730, At1g52020,
At3g24390, At4g05280, At1g25886, At4g03300; contains
Pfam profile PF02902: Ulp1 protease family, C-terminal
catalytic domain
Length = 1468
Score = 26.6 bits (56), Expect = 8.7
Identities = 17/43 (39%), Positives = 22/43 (51%), Gaps = 1/43 (2%)
Frame = -1
Query: 160 PRPVSPIHRILKTKPFCMLLLTSWSGRLSK-PTCPESFKVRRV 35
P +S I ++LK KP LL S G+L K P SF + V
Sbjct: 79 PEYISDIAKVLKGKPEMQFLLDSPFGKLFKIPKNKASFNAKLV 121
>At1g25886.1 68414.m03180 Ulp1 protease family protein contains Pfam
profile PF02902: Ulp1 protease family, C-terminal
catalytic domain; similar to At3g24380, At5g36840,
At5g35010, At3g42740, At4g05290, At2g14770, At3g43390,
At2g05560, At4g08880, At1g34730, At1g27790, At1g34740,
At1g27780, At5g36850, At3g42730, At1g52020, At3g24390,
At4g05280, At4g03300
Length = 1201
Score = 26.6 bits (56), Expect = 8.7
Identities = 17/43 (39%), Positives = 22/43 (51%), Gaps = 1/43 (2%)
Frame = -1
Query: 160 PRPVSPIHRILKTKPFCMLLLTSWSGRLSK-PTCPESFKVRRV 35
P +S I ++LK KP LL S G+L K P SF + V
Sbjct: 79 PEYISDIAKVLKGKPEMQFLLDSPFGKLFKIPKNKASFNAKLV 121
>At1g12290.1 68414.m01421 disease resistance protein (CC-NBS-LRR
class), putative domain signature CC-NBS-LRR exists,
suggestive of a disease resistance protein.
Length = 884
Score = 26.6 bits (56), Expect = 8.7
Identities = 17/51 (33%), Positives = 24/51 (47%), Gaps = 6/51 (11%)
Frame = +1
Query: 328 IKNTVSKRWWIILMHNS------RPISNKNSRSNIHCPIIITTNCMSVCTS 462
I N +SK+ +++L+ + I N S C I TT C SVC S
Sbjct: 250 ILNFLSKKRFVLLLDDIWKRVELTEIGIPNPTSENGCKIAFTTRCQSVCAS 300
>At1g07410.1 68414.m00790 Ras-related GTP-binding protein, putative
similar to GTP-binding protein RAB11C GI:1370146 from
[Lotus japonicus]
Length = 214
Score = 26.6 bits (56), Expect = 8.7
Identities = 9/27 (33%), Positives = 17/27 (62%)
Frame = +3
Query: 120 FVFNILCIGETGLGKSTLMDSLFNTNF 200
++F I+ IG++G+GKS ++ F
Sbjct: 11 YLFKIVLIGDSGVGKSNILSRFTRNEF 37
>At1g06400.1 68414.m00677 Ras-related GTP-binding protein (ARA-2)
identical to Ras-related protein ARA-2 SP:P28185 from
[Arabidopsis thaliana]
Length = 216
Score = 26.6 bits (56), Expect = 8.7
Identities = 9/27 (33%), Positives = 17/27 (62%)
Frame = +3
Query: 120 FVFNILCIGETGLGKSTLMDSLFNTNF 200
++F ++ IG++G+GKS L+ F
Sbjct: 12 YLFKLVLIGDSGVGKSNLLSRFTKNEF 38
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,219,966
Number of Sequences: 28952
Number of extensions: 195895
Number of successful extensions: 713
Number of sequences better than 10.0: 55
Number of HSP's better than 10.0 without gapping: 693
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 713
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 819227264
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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