Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0637
         (351 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_A4QN50 Cluster: Id:ibd5110 protein; n=7; Euteleostomi|R...    31   4.1  
UniRef50_Q55CB6 Cluster: Putative uncharacterized protein; n=1; ...    30   9.5  

>UniRef50_A4QN50 Cluster: Id:ibd5110 protein; n=7; Euteleostomi|Rep:
           Id:ibd5110 protein - Danio rerio (Zebrafish)
           (Brachydanio rerio)
          Length = 478

 Score = 31.5 bits (68), Expect = 4.1
 Identities = 15/42 (35%), Positives = 21/42 (50%)
 Frame = +3

Query: 180 NGTKKNYYLSKYKTTYFHLLLITFKTLTLNYPTKTPDPLFSP 305
           N  KK  Y S Y   Y H L +  + L+  YP++  +PL  P
Sbjct: 117 NLKKKETYQSVYNWQYVHCLYLWCRVLSTIYPSEVLEPLIYP 158


>UniRef50_Q55CB6 Cluster: Putative uncharacterized protein; n=1;
            Dictyostelium discoideum AX4|Rep: Putative
            uncharacterized protein - Dictyostelium discoideum AX4
          Length = 1362

 Score = 30.3 bits (65), Expect = 9.5
 Identities = 14/28 (50%), Positives = 20/28 (71%)
 Frame = +2

Query: 185  NKKKLLSFKI*NNIFSSASYNIQNINFK 268
            N+  LL+  I NNI S+ + N++NINFK
Sbjct: 1285 NQNDLLNIDIDNNINSNNNNNLRNINFK 1312


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 208,319,895
Number of Sequences: 1657284
Number of extensions: 2791424
Number of successful extensions: 6340
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 6205
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6338
length of database: 575,637,011
effective HSP length: 90
effective length of database: 426,481,451
effective search space used: 11088517726
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)