Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0637
         (351 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ223627-1|CAA11500.1|  371|Tribolium castaneum orthodenticle-1 ...    21   2.8  
AY043293-2|AAK96034.1|  353|Tribolium castaneum homeodomain tran...    20   6.4  
AF230313-1|AAF64147.1|  210|Tribolium castaneum labial protein p...    20   6.4  
AF230312-1|AAF64146.1|  253|Tribolium castaneum labial protein p...    20   6.4  
DQ659252-1|ABG47450.1|  377|Tribolium castaneum chitinase 13 pro...    20   8.5  

>AJ223627-1|CAA11500.1|  371|Tribolium castaneum orthodenticle-1
           protein protein.
          Length = 371

 Score = 21.4 bits (43), Expect = 2.8
 Identities = 7/17 (41%), Positives = 9/17 (52%)
 Frame = +3

Query: 180 NGTKKNYYLSKYKTTYF 230
           N +  NYY   Y  TY+
Sbjct: 294 NTSSHNYYAQNYAPTYY 310


>AY043293-2|AAK96034.1|  353|Tribolium castaneum homeodomain
           transcription factor Labialprotein.
          Length = 353

 Score = 20.2 bits (40), Expect = 6.4
 Identities = 7/14 (50%), Positives = 9/14 (64%)
 Frame = +1

Query: 271 TPLKHQTHYFHHKT 312
           TP   Q  Y+HH+T
Sbjct: 56  TPPSPQEVYYHHQT 69


>AF230313-1|AAF64147.1|  210|Tribolium castaneum labial protein
           protein.
          Length = 210

 Score = 20.2 bits (40), Expect = 6.4
 Identities = 7/14 (50%), Positives = 9/14 (64%)
 Frame = +1

Query: 271 TPLKHQTHYFHHKT 312
           TP   Q  Y+HH+T
Sbjct: 56  TPPSPQEVYYHHQT 69


>AF230312-1|AAF64146.1|  253|Tribolium castaneum labial protein
           protein.
          Length = 253

 Score = 20.2 bits (40), Expect = 6.4
 Identities = 7/14 (50%), Positives = 9/14 (64%)
 Frame = +1

Query: 271 TPLKHQTHYFHHKT 312
           TP   Q  Y+HH+T
Sbjct: 56  TPPSPQEVYYHHQT 69


>DQ659252-1|ABG47450.1|  377|Tribolium castaneum chitinase 13
           protein.
          Length = 377

 Score = 19.8 bits (39), Expect = 8.5
 Identities = 6/8 (75%), Positives = 7/8 (87%)
 Frame = -3

Query: 313 KFCGENNG 290
           +FCGE NG
Sbjct: 359 EFCGEKNG 366


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 54,955
Number of Sequences: 336
Number of extensions: 807
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 122,585
effective HSP length: 50
effective length of database: 105,785
effective search space used:  6981810
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)