Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0637
         (351 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBP19A11.04c |mor2|cps12|morphogenesis protein Mor2|Schizosacch...    25   4.5  
SPAC13C5.02 |dre4||DNA replication protein Dre4|Schizosaccharomy...    24   6.0  
SPBC24C6.07 |cdc14||SIN component Cdc14|Schizosaccharomyces pomb...    24   6.0  

>SPBP19A11.04c |mor2|cps12|morphogenesis protein
            Mor2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2196

 Score = 24.6 bits (51), Expect = 4.5
 Identities = 10/23 (43%), Positives = 16/23 (69%), Gaps = 2/23 (8%)
 Frame = +1

Query: 283  HQTH--YFHHKTSFHFSQLHDSF 345
            H+TH  Y+H +T F  S+ ++SF
Sbjct: 2164 HETHENYYHLRTMFQGSESNESF 2186


>SPAC13C5.02 |dre4||DNA replication protein Dre4|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 411

 Score = 24.2 bits (50), Expect = 6.0
 Identities = 8/26 (30%), Positives = 16/26 (61%)
 Frame = +2

Query: 266 KLPH*NTRPIIFTTKLHFIFHNYMIH 343
           ++P+ ++  ++FT K  + FHN   H
Sbjct: 88  RIPNNDSWVVVFTKKNRYFFHNLKSH 113


>SPBC24C6.07 |cdc14||SIN component Cdc14|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 240

 Score = 24.2 bits (50), Expect = 6.0
 Identities = 10/25 (40%), Positives = 15/25 (60%)
 Frame = +3

Query: 141 PKPHSFKTVNAQ*NGTKKNYYLSKY 215
           P+P+S   +  +   T+K  YLSKY
Sbjct: 191 PEPYSIDVIAYRKTRTEKQAYLSKY 215


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 923,806
Number of Sequences: 5004
Number of extensions: 13129
Number of successful extensions: 25
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 24
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 25
length of database: 2,362,478
effective HSP length: 64
effective length of database: 2,042,222
effective search space used: 106195544
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)