Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0637
         (351 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_29350| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   9.9  
SB_4485| Best HMM Match : No HMM Matches (HMM E-Value=.)               26   9.9  
SB_16877| Best HMM Match : Mito_carr (HMM E-Value=0)                   26   9.9  

>SB_29350| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 211

 Score = 25.8 bits (54), Expect = 9.9
 Identities = 9/15 (60%), Positives = 11/15 (73%)
 Frame = +1

Query: 271 TPLKHQTHYFHHKTS 315
           TPL H+ H+ HH TS
Sbjct: 101 TPLSHRYHHRHHHTS 115


>SB_4485| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1769

 Score = 25.8 bits (54), Expect = 9.9
 Identities = 13/25 (52%), Positives = 15/25 (60%), Gaps = 1/25 (4%)
 Frame = +1

Query: 280 KHQTHYFHHKTSFHF-SQLHDSF*K 351
           K Q HY  HKTS++  SQ H  F K
Sbjct: 57  KIQNHYALHKTSYNIHSQAHPGFLK 81


>SB_16877| Best HMM Match : Mito_carr (HMM E-Value=0)
          Length = 1024

 Score = 25.8 bits (54), Expect = 9.9
 Identities = 17/49 (34%), Positives = 24/49 (48%), Gaps = 3/49 (6%)
 Frame = +3

Query: 159 KTVNAQ*NGTKKNYYLSKYKTTYFHLLLITFKTLTLNYPT---KTPDPL 296
           KT  A  N   K+Y+   Y++ YF  LLI ++T     P    K  DP+
Sbjct: 88  KTAKAAQNIKVKSYF-RYYESNYFMFLLIVYRTEKKQNPVQDKKQTDPI 135


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,143,833
Number of Sequences: 59808
Number of extensions: 82697
Number of successful extensions: 164
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 157
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 164
length of database: 16,821,457
effective HSP length: 73
effective length of database: 12,455,473
effective search space used: 535585339
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)