Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0636
         (524 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPB17E12.03 |||ubiquitin-protein ligase E3 |Schizosaccharomyce...    29   0.56 
SPBC26H8.10 |dis3|rrp44|3'-5' exoribonuclease subunit Dis3 |Schi...    29   0.56 
SPAPYUK71.03c |||C2 domain protein|Schizosaccharomyces pombe|chr...    27   2.3  
SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain |Schizosaccha...    26   4.0  
SPAC1783.01 |||FAD binding protein|Schizosaccharomyces pombe|chr...    25   6.9  
SPBC1826.01c |mot1||TATA-binding protein associated factor Mot1|...    25   6.9  
SPBC12C2.11 ||SPBC21D10.02|glutamine-fructose-6-phosphate transa...    25   6.9  
SPBC651.09c |||RNA polymerase II associated Paf1 complex |Schizo...    25   9.1  
SPBC19C7.01 ||SPBC32F12.13c|Mago binding protein homolog|Schizos...    25   9.1  
SPBC16G5.17 |||transcription factor, zf-fungal binuclear cluster...    25   9.1  

>SPAPB17E12.03 |||ubiquitin-protein ligase E3 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 311

 Score = 28.7 bits (61), Expect = 0.56
 Identities = 14/49 (28%), Positives = 19/49 (38%)
 Frame = +1

Query: 280 HLASKVPAFIRLLAPKGSLEVHEEAWNAYPYCRTVLTNPGYMKENFVIC 426
           HL     AF  L  PK   E++    +    C   + NP  +   FV C
Sbjct: 229 HLKKGEVAFTELAPPKLPFEINVSTTDICKICGEKIKNPAVLSTGFVFC 277


>SPBC26H8.10 |dis3|rrp44|3'-5' exoribonuclease subunit Dis3
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 970

 Score = 28.7 bits (61), Expect = 0.56
 Identities = 23/66 (34%), Positives = 31/66 (46%), Gaps = 2/66 (3%)
 Frame = +1

Query: 310 RLLAPKGSLEVHEEAWN--AYPYCRTVLTNPGYMKENFVICIESLHLPDAGDQYNVHQLP 483
           RLLA   + EVH+   N   Y Y    +  PGY K   V   E+L+    GD   +  LP
Sbjct: 256 RLLACIKNGEVHKGLINISTYNYLEGSVVVPGYNKPVLVSGRENLNRAVQGDIVCIQILP 315

Query: 484 PEKLKT 501
            ++ KT
Sbjct: 316 QDQWKT 321


>SPAPYUK71.03c |||C2 domain protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1225

 Score = 26.6 bits (56), Expect = 2.3
 Identities = 12/33 (36%), Positives = 20/33 (60%)
 Frame = +1

Query: 286 ASKVPAFIRLLAPKGSLEVHEEAWNAYPYCRTV 384
           ++K+P  I  L+  G+L V  +  + YPY +TV
Sbjct: 331 SAKMPVLIEDLSFTGNLRVKVKLIDKYPYAKTV 363



 Score = 26.2 bits (55), Expect = 3.0
 Identities = 17/48 (35%), Positives = 25/48 (52%), Gaps = 2/48 (4%)
 Frame = -2

Query: 286 PNGRSCTCTVQRVFSTEQWIIF--ERFILYDLYAFTSAGFIFGDLRHA 149
           P G++ T  VQ +F+ E    F      L DL+A T  G ++  L+HA
Sbjct: 627 PEGKNATLGVQ-IFTEESEHPFGTANVSLQDLFAATKTGLLWFPLQHA 673


>SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 4196

 Score = 25.8 bits (54), Expect = 4.0
 Identities = 16/44 (36%), Positives = 22/44 (50%), Gaps = 2/44 (4%)
 Frame = -2

Query: 475 GGHCIG--PRRPVNAAILYI*RSFLSCNRDSSVLFYSTGRRSTL 350
           GGH     P RP+NA  LY  +  +SC   + +   S   RST+
Sbjct: 133 GGHKSNEIPERPINAIFLYT-KYVMSCYFTAYLAMESVDDRSTI 175


>SPAC1783.01 |||FAD binding protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 583

 Score = 25.0 bits (52), Expect = 6.9
 Identities = 9/22 (40%), Positives = 14/22 (63%)
 Frame = +1

Query: 382 VLTNPGYMKENFVICIESLHLP 447
           VLTNPG +K  + +C++    P
Sbjct: 174 VLTNPGAVKRTYNLCLDISKYP 195


>SPBC1826.01c |mot1||TATA-binding protein associated factor
            Mot1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1953

 Score = 25.0 bits (52), Expect = 6.9
 Identities = 14/41 (34%), Positives = 19/41 (46%)
 Frame = -1

Query: 413  FSFM*PGFVSTVLQYG*AFHASSCTSRDPFGASSLMKAGTL 291
            F F+ PGF+ T   +   F      SRD   +S   + GTL
Sbjct: 1537 FDFLMPGFLGTEKTFQERFVRPIAASRDAKSSSKERERGTL 1577


>SPBC12C2.11 ||SPBC21D10.02|glutamine-fructose-6-phosphate
           transaminase |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 696

 Score = 25.0 bits (52), Expect = 6.9
 Identities = 7/14 (50%), Positives = 10/14 (71%)
 Frame = +3

Query: 225 IIHCSVENTRWTVH 266
           I HC++ +TRW  H
Sbjct: 78  INHCAISHTRWATH 91


>SPBC651.09c |||RNA polymerase II associated Paf1 complex
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 560

 Score = 24.6 bits (51), Expect = 9.1
 Identities = 20/73 (27%), Positives = 34/73 (46%), Gaps = 3/73 (4%)
 Frame = +2

Query: 173 ETGGGEGIEVIKNE---PFKDYPLLGGKYSLDSTRTRSTIWRPKFRPSSGYLLRKDLSKY 343
           E  GGEG E  ++E    FK+   L GK+  ++ R +        R S  +   +++SK 
Sbjct: 52  EESGGEGNEKSEDEFEEKFKNPYRLEGKFKDEADRAKIMAMTEIERESILFEREEEISKL 111

Query: 344 TKKRGTPTRTVEQ 382
            ++R    R  +Q
Sbjct: 112 MERRELAIRLHQQ 124


>SPBC19C7.01 ||SPBC32F12.13c|Mago binding protein
           homolog|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 196

 Score = 24.6 bits (51), Expect = 9.1
 Identities = 13/50 (26%), Positives = 22/50 (44%)
 Frame = +2

Query: 209 NEPFKDYPLLGGKYSLDSTRTRSTIWRPKFRPSSGYLLRKDLSKYTKKRG 358
           N  F    L+ GK+ +  +R +    R +     GY   +D+ +Y   RG
Sbjct: 4   NGSFSGARLVDGKWIIPESRRKDGSVRRERAVKPGYTAPEDIKRYRPGRG 53


>SPBC16G5.17 |||transcription factor, zf-fungal binuclear cluster
           type |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 560

 Score = 24.6 bits (51), Expect = 9.1
 Identities = 13/56 (23%), Positives = 27/56 (48%)
 Frame = -3

Query: 420 NEVFFHVTGIRQYCSTVRVGVPRFFVYFERSFRSK*PDEGRNFGRQMVDLVRVLSN 253
           +++ F    ++    TVR  + + F+   R+     PD  +  G+  + L R++SN
Sbjct: 394 SDIHFRYLFLKTVFWTVRKNLYQGFITVSRTLVPNYPDIVQKLGQTSIQLSRLISN 449


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,276,941
Number of Sequences: 5004
Number of extensions: 48393
Number of successful extensions: 132
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 128
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 131
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 214353836
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)