Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0636
         (524 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_02_0616 - 9874882-9874974,9875067-9875189,9875284-9875379,987...    58   3e-09
08_01_1050 - 10649434-10651917                                         29   2.3  
11_06_0226 + 21461174-21462018,21462508-21464439,21464746-21464845     28   4.0  
06_02_0172 + 12594542-12596083                                         28   4.0  
11_06_0145 - 20615044-20617167,20617444-20618076                       27   9.2  
08_02_1038 - 23862936-23863359,23863489-23863661                       27   9.2  
07_01_0783 + 6068229-6068503,6069159-6069269,6069806-6070150,607...    27   9.2  
03_02_0306 + 7290086-7290283,7290998-7291154,7291270-7291377,729...    27   9.2  

>03_02_0616 -
           9874882-9874974,9875067-9875189,9875284-9875379,
           9875457-9875666,9875718-9875812,9876032-9876123,
           9876539-9876660
          Length = 276

 Score = 58.4 bits (135), Expect = 3e-09
 Identities = 33/78 (42%), Positives = 44/78 (56%), Gaps = 3/78 (3%)
 Frame = +1

Query: 244 KILVGQYTYKIYHLASKVPAFIRLLAPKGSLEVHEEAWNAYPYCRTVLTNPGYMKENFVI 423
           K+  GQYT K YHL SK+P++++  AP  +L VHEE+W AYP  RT      Y    F  
Sbjct: 26  KLGKGQYTSKNYHLQSKIPSWMKGFAPASALTVHEESWCAYPNSRTGFLIICYQCPLFSK 85

Query: 424 C---IESLHLPDAGDQYN 468
           C   I+++  PD G   N
Sbjct: 86  CSLTIDTVIRPDNGCSEN 103



 Score = 34.7 bits (76), Expect = 0.046
 Identities = 17/60 (28%), Positives = 32/60 (53%), Gaps = 2/60 (3%)
 Frame = +2

Query: 158 EVSKNETGGGEGIEVIKNEPFKDYPLLGGKYSLDSTRTRSTI--WRPKFRPSSGYLLRKD 331
           ++ +  T   EG+EV++  PF+D  L  G+Y+  +   +S I  W   F P+S   + ++
Sbjct: 2   KMEQQNTNSKEGVEVLQQVPFEDEKLGKGQYTSKNYHLQSKIPSWMKGFAPASALTVHEE 61


>08_01_1050 - 10649434-10651917
          Length = 827

 Score = 29.1 bits (62), Expect = 2.3
 Identities = 15/53 (28%), Positives = 25/53 (47%)
 Frame = +2

Query: 128 YQVAQLYCVAEVSKNETGGGEGIEVIKNEPFKDYPLLGGKYSLDSTRTRSTIW 286
           + V  L CVA   +     G+ +  +K   FK+ P + G ++    +T ST W
Sbjct: 435 FSVLGLLCVAVACRRRRKRGDVLPAVKQVSFKEEPGISGPFAF---QTDSTTW 484


>11_06_0226 + 21461174-21462018,21462508-21464439,21464746-21464845
          Length = 958

 Score = 28.3 bits (60), Expect = 4.0
 Identities = 14/31 (45%), Positives = 19/31 (61%)
 Frame = -2

Query: 409 LSCNRDSSVLFYSTGRRSTLLRVLREILSEQ 317
           + C  D S + ++TG  STLL  L E+L EQ
Sbjct: 1   MPCLSDPSGMEFATGVMSTLLSKLAELLKEQ 31


>06_02_0172 + 12594542-12596083
          Length = 513

 Score = 28.3 bits (60), Expect = 4.0
 Identities = 13/36 (36%), Positives = 19/36 (52%)
 Frame = +1

Query: 280 HLASKVPAFIRLLAPKGSLEVHEEAWNAYPYCRTVL 387
           H+  K+ A +R + PKG   V EE     PY + V+
Sbjct: 333 HVMGKLQAEVRRVMPKGQDIVTEEQLGCMPYLKAVI 368


>11_06_0145 - 20615044-20617167,20617444-20618076
          Length = 918

 Score = 27.1 bits (57), Expect = 9.2
 Identities = 17/48 (35%), Positives = 29/48 (60%), Gaps = 1/48 (2%)
 Frame = -3

Query: 519 LWGPLGGL*FFRRQLVDIVLVPG-VR*MQRFYTYNEVFFHVTGIRQYC 379
           LW P G + F +R+LVD  +  G ++      +YNE F H+T ++++C
Sbjct: 405 LW-PEGHI-FNQRKLVDFWIGSGLIQGDDIEASYNEGFSHITTLQEFC 450


>08_02_1038 - 23862936-23863359,23863489-23863661
          Length = 198

 Score = 27.1 bits (57), Expect = 9.2
 Identities = 11/17 (64%), Positives = 12/17 (70%)
 Frame = -1

Query: 161 PPPRSITGPLDTLQLLE 111
           PPP  + GPL TLQ LE
Sbjct: 44  PPPAKLFGPLPTLQRLE 60


>07_01_0783 + 6068229-6068503,6069159-6069269,6069806-6070150,
            6071030-6071211,6071331-6071422,6071505-6071835,
            6071960-6072170,6072551-6072665,6073677-6073838,
            6073938-6074610,6074766-6074972,6075134-6076254
          Length = 1274

 Score = 27.1 bits (57), Expect = 9.2
 Identities = 15/32 (46%), Positives = 18/32 (56%)
 Frame = -2

Query: 475  GGHCIGPRRPVNAAILYI*RSFLSCNRDSSVL 380
            G HC G   PV   ILY+ R F  C +D S+L
Sbjct: 1021 GSHCSGGLSPVAPGILYL-RIF-RCIKDCSIL 1050


>03_02_0306 +
           7290086-7290283,7290998-7291154,7291270-7291377,
           7291494-7291621,7291733-7291861,7291945-7292012,
           7292130-7292361
          Length = 339

 Score = 27.1 bits (57), Expect = 9.2
 Identities = 14/49 (28%), Positives = 23/49 (46%)
 Frame = +1

Query: 229 STARWKILVGQYTYKIYHLASKVPAFIRLLAPKGSLEVHEEAWNAYPYC 375
           STA+WKI VG +T +           ++LL P   +   +   N + +C
Sbjct: 206 STAKWKIAVGHHTIRSVSDHGDTKELLQLLLPVLKVNGIDFYINGHDHC 254


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,210,513
Number of Sequences: 37544
Number of extensions: 323381
Number of successful extensions: 755
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 738
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 755
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1154538620
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)