Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0636
         (524 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_31179| Best HMM Match : No HMM Matches (HMM E-Value=.)             104   4e-23
SB_31178| Best HMM Match : No HMM Matches (HMM E-Value=.)              99   1e-21
SB_47942| Best HMM Match : TSP_1 (HMM E-Value=0)                       31   0.77 
SB_57667| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.4  
SB_54489| Best HMM Match : Aa_trans (HMM E-Value=0.02)                 28   5.4  
SB_42322| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.4  
SB_20479| Best HMM Match : Collagen (HMM E-Value=1)                    28   5.4  
SB_12216| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.2  
SB_29551| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.2  
SB_356| Best HMM Match : zf-C3HC4 (HMM E-Value=0.06)                   27   9.5  

>SB_31179| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 283

 Score =  104 bits (250), Expect = 4e-23
 Identities = 48/85 (56%), Positives = 64/85 (75%), Gaps = 1/85 (1%)
 Frame = +1

Query: 256 GQYTYKIYHLASKVPAFIRLLAPKGSLEVHEEAWNAYPYCRTVLTNPGYMKENFVICIES 435
           GQYT+K+ HL SKVP+F+R+LAP GSLEVHE+AWNAYP+CRT  +N  YMKE+F + I++
Sbjct: 65  GQYTHKLIHLHSKVPSFVRMLAPSGSLEVHEKAWNAYPFCRTEYSNT-YMKEHFSVIIDT 123

Query: 436 LHLPDAGDQY-NVHQLPPEKLKTPE 507
            H P   D++ NVH L   +L+  E
Sbjct: 124 WHKPGHKDEFHNVHNLGNPELQKRE 148



 Score = 83.0 bits (196), Expect = 1e-16
 Identities = 35/47 (74%), Positives = 43/47 (91%)
 Frame = +2

Query: 80  MIIKEYRVTLPLTVEEYQVAQLYCVAEVSKNETGGGEGIEVIKNEPF 220
           ++IKEYR+ LP++VEEYQ+AQLY VAE SKNETGGGEGIEV+ NEP+
Sbjct: 2   VVIKEYRIPLPISVEEYQIAQLYAVAEASKNETGGGEGIEVLVNEPY 48


>SB_31178| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 281

 Score =   99 bits (238), Expect = 1e-21
 Identities = 49/85 (57%), Positives = 60/85 (70%), Gaps = 1/85 (1%)
 Frame = +1

Query: 256 GQYTYKIYHLASKVPAFIRLLAPKGSLEVHEEAWNAYPYCRTVLTNPGYMKENFVICIES 435
           GQYT KI HL SKVP +I  LAP+G+LEVHEEAWNAYPYC+TV TNP YM ENF + I++
Sbjct: 63  GQYTLKIMHLKSKVPQWIVKLAPEGALEVHEEAWNAYPYCKTVYTNP-YMGENFHVIIKT 121

Query: 436 LHLPDAGDQY-NVHQLPPEKLKTPE 507
            H      ++ NVH+L   +L   E
Sbjct: 122 WHKEGPSSRHSNVHELNESELAKRE 146



 Score = 76.2 bits (179), Expect = 2e-14
 Identities = 32/45 (71%), Positives = 39/45 (86%)
 Frame = +2

Query: 86  IKEYRVTLPLTVEEYQVAQLYCVAEVSKNETGGGEGIEVIKNEPF 220
           +KEYRV LP++VE Y++AQLY V E S NETGGGEGIEV+KNEP+
Sbjct: 4   LKEYRVELPISVENYRIAQLYTVTEASMNETGGGEGIEVVKNEPY 48


>SB_47942| Best HMM Match : TSP_1 (HMM E-Value=0)
          Length = 2195

 Score = 30.7 bits (66), Expect = 0.77
 Identities = 18/49 (36%), Positives = 25/49 (51%), Gaps = 3/49 (6%)
 Frame = +2

Query: 209  NEPFKDYPLLGGKYSLDSTRTRSTIWRPKFRPSSGYLLRKD---LSKYT 346
            N P  +Y +   K  L  +RTR ++ RP +  SSG     +   LSKYT
Sbjct: 972  NGPILEYRISAEKIGLGGSRTRRSLPRPNYSTSSGEANSTEIFGLSKYT 1020


>SB_57667| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 799

 Score = 27.9 bits (59), Expect = 5.4
 Identities = 12/26 (46%), Positives = 15/26 (57%)
 Frame = +1

Query: 319 APKGSLEVHEEAWNAYPYCRTVLTNP 396
           +PK  L +H   W+    CRTVLT P
Sbjct: 528 SPKMILRLHNLCWHHAILCRTVLTPP 553


>SB_54489| Best HMM Match : Aa_trans (HMM E-Value=0.02)
          Length = 385

 Score = 27.9 bits (59), Expect = 5.4
 Identities = 20/67 (29%), Positives = 29/67 (43%), Gaps = 1/67 (1%)
 Frame = +2

Query: 38  VDSFMCI*VKK*LNMIIKEYRVTLPLTVEEYQVAQLYCVAEVSKNETGGGEG-IEVIKNE 214
           V SFMC      L M+I++    L + + +Y +  LYC   V           I  +   
Sbjct: 245 VFSFMCHHTISSLIMLIRDKHKALAVFLFDYTIELLYCSVLVGTAILSRPPSEINALYTL 304

Query: 215 PFKDYPL 235
            F+DYPL
Sbjct: 305 TFRDYPL 311


>SB_42322| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 294

 Score = 27.9 bits (59), Expect = 5.4
 Identities = 12/34 (35%), Positives = 20/34 (58%)
 Frame = +2

Query: 194 IEVIKNEPFKDYPLLGGKYSLDSTRTRSTIWRPK 295
           IE +K+ PF D      +Y +DS++ ++  W PK
Sbjct: 201 IEFVKDRPFNDK-----RYPMDSSKVKALGWEPK 229


>SB_20479| Best HMM Match : Collagen (HMM E-Value=1)
          Length = 1214

 Score = 27.9 bits (59), Expect = 5.4
 Identities = 20/55 (36%), Positives = 27/55 (49%), Gaps = 2/55 (3%)
 Frame = +1

Query: 238 RWKILVGQYTYKIYHLASKVP-AFIRLLAP-KGSLEVHEEAWNAYPYCRTVLTNP 396
           RW IL   +  K   L   +  AFI LL+  KG+ E+H      YPY +  L +P
Sbjct: 406 RWYILCRPFNVKRALLVLCIAVAFIWLLSSLKGNCEIHIRDDEFYPYVQFNLNDP 460


>SB_12216| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2992

 Score = 27.5 bits (58), Expect = 7.2
 Identities = 14/41 (34%), Positives = 21/41 (51%), Gaps = 1/41 (2%)
 Frame = +3

Query: 405  ERKLRYMYRIAAFTGR-RGPIQCPPAAA*KTKDPRGVPINI 524
            E++  Y++R+AAFT   +GP   P A       P G   N+
Sbjct: 1444 EKQEEYLFRVAAFTAAGKGPWSEPMAVLTDADKPEGTISNV 1484


>SB_29551| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 819

 Score = 27.5 bits (58), Expect = 7.2
 Identities = 11/27 (40%), Positives = 15/27 (55%)
 Frame = +1

Query: 370 YCRTVLTNPGYMKENFVICIESLHLPD 450
           Y    L +P YM   F+ C+E+ HL D
Sbjct: 205 YTYRALASPVYMSLTFLSCVEAEHLTD 231


>SB_356| Best HMM Match : zf-C3HC4 (HMM E-Value=0.06)
          Length = 587

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 13/43 (30%), Positives = 24/43 (55%)
 Frame = -3

Query: 162 TSATQYNWAT*YSSTVRGSVTRYSLIIMFNYFFT*MHMKLSTN 34
           T+ T     T Y++TV  ++T Y+  I  N + T ++  ++TN
Sbjct: 389 TNYTTTTTITNYTTTVSTTITNYTTTITINNYTTTVNTTITTN 431


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,123,526
Number of Sequences: 59808
Number of extensions: 363627
Number of successful extensions: 888
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 817
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 887
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1184975377
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)