Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0636
         (524 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g60480.1 68418.m07585 zinc finger homeobox family protein / Z...    28   3.3  
At5g09550.1 68418.m01106 Rab GDP dissociation inhibitor, putativ...    28   3.3  
At1g12280.1 68414.m01420 disease resistance protein (CC-NBS-LRR ...    28   3.3  
At5g48740.1 68418.m06032 leucine-rich repeat family protein / pr...    27   5.8  
At3g20620.1 68416.m02609 F-box family protein-related contains w...    27   5.8  
At1g65490.1 68414.m07431 expressed protein                             27   5.8  
At3g52110.1 68416.m05719 expressed protein                             27   7.7  

>At5g60480.1 68418.m07585 zinc finger homeobox family protein /
           ZF-HD homeobox family protein predicted proteins,
           Arabidopsis thaliana
          Length = 191

 Score = 28.3 bits (60), Expect = 3.3
 Identities = 13/50 (26%), Positives = 24/50 (48%)
 Frame = +1

Query: 367 PYCRTVLTNPGYMKENFVICIESLHLPDAGDQYNVHQLPPEKLKTPEGSP 516
           P   T+LT+P  ++ +   C  + H     D ++ H+ PP  L+    +P
Sbjct: 29  PKSTTILTDPPSLRCDACGCHRNFHRRSPSDGFSQHRSPPSPLQLQPLAP 78


>At5g09550.1 68418.m01106 Rab GDP dissociation inhibitor, putative
           strong similarity to GDP dissociation inhibitor protein
           OsGDI1 [Oryza sativa] GI:2384758; contains Pfam profile
           PF00996: GDP dissociation inhibitor
          Length = 365

 Score = 28.3 bits (60), Expect = 3.3
 Identities = 14/48 (29%), Positives = 24/48 (50%), Gaps = 8/48 (16%)
 Frame = +1

Query: 373 CRTVLTNPGYMKENF--------VICIESLHLPDAGDQYNVHQLPPEK 492
           C+ V+ +P Y+ E           +CI S  +PD  D ++V  + P+K
Sbjct: 198 CKKVVCDPSYLSEKVKKVGKVTRAVCIMSHPIPDTNDAHSVQIILPQK 245


>At1g12280.1 68414.m01420 disease resistance protein (CC-NBS-LRR
           class), putative domain signature CC-NBS-LRR exists,
           suggestive of a disease resistance protein.
          Length = 894

 Score = 28.3 bits (60), Expect = 3.3
 Identities = 10/19 (52%), Positives = 13/19 (68%)
 Frame = -1

Query: 470 TLYWSPASGKCSDSIHITK 414
           ++YW P S  C  +IHITK
Sbjct: 815 SIYWQPLSFPCLKTIHITK 833


>At5g48740.1 68418.m06032 leucine-rich repeat family protein /
           protein kinase family protein contains Pfam domains
           PF00560: Leucine Rich Repeat and PF00069: Protein kinase
           domain
          Length = 895

 Score = 27.5 bits (58), Expect = 5.8
 Identities = 17/44 (38%), Positives = 23/44 (52%)
 Frame = +2

Query: 185 GEGIEVIKNEPFKDYPLLGGKYSLDSTRTRSTIWRPKFRPSSGY 316
           G GI VI +   +  PL   KYSL+   +   I R  +R +SGY
Sbjct: 152 GRGIPVISSLEVRPLPLGSYKYSLEG--SPDIILRRSYRINSGY 193


>At3g20620.1 68416.m02609 F-box family protein-related contains weak
           hit to TIGRFAM TIGR01640 : F-box protein interaction
           domain; similar to F-box protein family, AtFBX8
           (GI:20197464) [Arabidopsis thaliana]
          Length = 391

 Score = 27.5 bits (58), Expect = 5.8
 Identities = 11/37 (29%), Positives = 19/37 (51%)
 Frame = +2

Query: 119 VEEYQVAQLYCVAEVSKNETGGGEGIEVIKNEPFKDY 229
           V +Y+V +++C  ++   E G  EG  V +   F  Y
Sbjct: 156 VSDYKVYRIFCTGKIIPEERGPAEGFYVQEGRFFTKY 192


>At1g65490.1 68414.m07431 expressed protein
          Length = 88

 Score = 27.5 bits (58), Expect = 5.8
 Identities = 9/24 (37%), Positives = 15/24 (62%)
 Frame = -2

Query: 301 PELWTPNGRSCTCTVQRVFSTEQW 230
           P +WTP+  SC  +   VF++ +W
Sbjct: 42  PIVWTPHSNSCGGSPASVFASSKW 65


>At3g52110.1 68416.m05719 expressed protein 
          Length = 362

 Score = 27.1 bits (57), Expect = 7.7
 Identities = 10/45 (22%), Positives = 21/45 (46%)
 Frame = +1

Query: 241 WKILVGQYTYKIYHLASKVPAFIRLLAPKGSLEVHEEAWNAYPYC 375
           WK +  ++   +++   + P +   LAP     + ++AW   P C
Sbjct: 8   WKRIDSRFVEDVFYEHIRAPKWFDFLAPTHFDSIDDDAWFCKPEC 52


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,907,313
Number of Sequences: 28952
Number of extensions: 251721
Number of successful extensions: 566
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 551
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 566
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 967280384
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)