Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ce--0635
         (631 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC3E7.11c |||DNAJ protein Caj1/Djp1-type|Schizosaccharomyces p...    27   3.0  
SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomy...    26   5.2  
SPAC30D11.02c |||sequence orphan|Schizosaccharomyces pombe|chr 1...    26   5.2  
SPAC1F7.01c |spt6|SPAC694.07c|transcription elongation factor Sp...    25   9.0  
SPAC631.02 |||bromodomain protein|Schizosaccharomyces pombe|chr ...    25   9.0  
SPAC19A8.15 |trp2||tryptophan synthase|Schizosaccharomyces pombe...    25   9.0  

>SPBC3E7.11c |||DNAJ protein Caj1/Djp1-type|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 355

 Score = 26.6 bits (56), Expect = 3.0
 Identities = 14/27 (51%), Positives = 16/27 (59%)
 Frame = -3

Query: 308 RGVAGSNPAKGRYLYDKYNVFSSVMDV 228
           RGV GS  AKG  L D +N   S +DV
Sbjct: 225 RGVWGSLCAKGTLLKDTWNTVVSAVDV 251


>SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 4924

 Score = 25.8 bits (54), Expect = 5.2
 Identities = 19/63 (30%), Positives = 30/63 (47%), Gaps = 5/63 (7%)
 Frame = +3

Query: 432  KSESNYFLGLFQKYYISMNKIKNNKSLKLHENDKMRC---FLICTKVDDHG--TPW*NDM 596
            KS+  YF  +++  +I+   + NN SL       ++C   F + T    HG    W  D+
Sbjct: 3418 KSDGEYFQVVWKSDFIAEVDVLNNDSLIKTVRYSLKCEKGFFLVTVTLFHGIYDGWSLDL 3477

Query: 597  LLN 605
            LLN
Sbjct: 3478 LLN 3480


>SPAC30D11.02c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 85

 Score = 25.8 bits (54), Expect = 5.2
 Identities = 13/28 (46%), Positives = 15/28 (53%)
 Frame = +1

Query: 244 ENTLYLSYKYLPLAGFEPATPLCSDHVT 327
           EN  YL   YLP+ GF  A  +C  H T
Sbjct: 54  ENKNYLIIVYLPIEGFS-ANHMCISHGT 80


>SPAC1F7.01c |spt6|SPAC694.07c|transcription elongation factor
           Spt6|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1365

 Score = 25.0 bits (52), Expect = 9.0
 Identities = 10/30 (33%), Positives = 16/30 (53%)
 Frame = +3

Query: 471 YYISMNKIKNNKSLKLHENDKMRCFLICTK 560
           Y +  N+ +N  +  L +ND    F +CTK
Sbjct: 343 YIVHNNRERNTITPLLSQNDLWNIFFLCTK 372


>SPAC631.02 |||bromodomain protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 727

 Score = 25.0 bits (52), Expect = 9.0
 Identities = 13/34 (38%), Positives = 19/34 (55%), Gaps = 2/34 (5%)
 Frame = +3

Query: 486 NKIKNNK--SLKLHENDKMRCFLICTKVDDHGTP 581
           NK+ +N+  S+K  E D +  F  C K +  GTP
Sbjct: 445 NKLNHNEYASMKAFEADMVLMFKNCYKFNSAGTP 478


>SPAC19A8.15 |trp2||tryptophan synthase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 697

 Score = 25.0 bits (52), Expect = 9.0
 Identities = 13/34 (38%), Positives = 16/34 (47%)
 Frame = -1

Query: 310 TGGSRVRIPPKEDIYMINIMYFPALWMSIKYMYV 209
           +GGS    PP   +  IN MY P  +     MYV
Sbjct: 278 SGGSVATAPPAAVVEPINEMYLPQKYGMFGGMYV 311


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,454,798
Number of Sequences: 5004
Number of extensions: 49037
Number of successful extensions: 118
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 114
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 118
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 279695522
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)